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NC_022763.1__YP_008770430.1__Spock_206__00206

Bact-Vir

NC_022763.1__YP_008770430.1__Spock_206__00206

Identity

Accession:
NC_022763 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-103
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 47.0 5.25e-01 82.9% 81.4%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 50.0 5.46e-01 85.5% 83.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 47.0 5.20e-01 82.9% 85.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 51.0 5.35e-01 84.2% 83.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 44.0 5.37e-01 78.9% 100.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.38e-01 93.4% 78.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 45.0 5.23e-01 82.9% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 46.0 3.97e-01 86.8% 45.2%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.84e-01 84.2% 69.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.32e-01 92.1% 55.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.67 52.0 3.74e-01 84.2% 29.6%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.66 51.0 4.65e-01 81.6% 62.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 48.0 5.34e-01 88.2% 98.3%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.86e-01 82.9% 100.0%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 47.0 3.67e-01 76.3% 93.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.85e-01 85.5% 81.9%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 5.00e-01 85.5% 90.6%
5jzjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 44.0 4.13e-01 73.7% 91.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.43e-01 84.2% 74.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 46.0 4.22e-01 90.8% 60.6%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 46.0 3.43e-01 82.9% 97.1%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.60 43.0 3.95e-01 75.0% 63.0%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 39.0 4.32e-01 80.3% 86.2%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 42.0 3.75e-01 73.7% 87.6%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 4.33e-01 88.2% 81.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.24e-01 86.8% 86.4%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.78e-01 96.1% 73.7%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 4.23e-01 73.7% 81.8%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.59 48.0 3.69e-01 93.4% 88.3%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 3.77e-01 75.0% 93.8%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.66e-01 96.1% 44.0%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.61e-01 94.7% 43.0%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.81e-01 86.8% 75.6%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 3.59e-01 73.7% 92.4%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 44.0 3.41e-01 85.5% 85.3%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 41.0 3.65e-01 92.1% 53.6%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.56 45.0 4.04e-01 90.8% 79.6%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 39.0 3.16e-01 73.7% 88.8%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 35.0 3.81e-01 77.6% 80.3%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.32e-01 76.3% 83.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.37e-01 100.0% 98.5%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 41.0 3.08e-01 85.5% 84.1%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 41.0 3.23e-01 85.5% 77.8%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.73e-01 96.1% 77.5%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.86e-01 81.6% 81.2%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.97e-01 90.8% 70.2%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 47.0 3.46e-01 100.0% 73.5%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.82e-01 90.8% 78.4%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.52 39.0 3.89e-01 92.1% 77.1%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.78e-01 90.8% 86.1%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.82e-01 90.8% 85.0%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.50 35.0 3.02e-01 73.7% 83.2%
2dslA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 37.0 3.21e-01 77.6% 97.4%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.79 62.0 6.10e-01 89.5% 78.8%
4272564 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.78 62.0 5.47e-01 84.2% 59.3%
3600139 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 61.0 5.36e-01 84.2% 61.8%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 61.0 5.31e-01 85.5% 60.0%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 4.87e-01 88.2% 57.9%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 51.0 5.70e-01 81.6% 90.0%
4024274 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.75 60.0 5.34e-01 85.5% 61.9%
3416068 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.74 53.0 4.07e-01 86.8% 36.1%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.74 53.0 5.51e-01 93.4% 81.4%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.45e-01 82.9% 85.9%
4400596 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.73 67.0 5.15e-01 100.0% 69.4%
3520654 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.72 49.0 3.92e-01 89.5% 36.0%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 53.0 5.57e-01 92.1% 86.8%
4026222 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 56.0 4.56e-01 85.5% 71.0%
5041801 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.70 50.0 4.89e-01 84.2% 67.1%
3275615 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 53.0 4.47e-01 100.0% 48.8%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.09e-01 93.4% 80.0%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.68 58.0 5.27e-01 92.1% 77.0%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 54.0 5.34e-01 88.2% 81.2%
4581369 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.68 57.0 5.13e-01 92.1% 73.3%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.19e-01 88.2% 76.5%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.98e-01 92.1% 80.0%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.09e-01 88.2% 81.3%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 48.0 4.57e-01 85.5% 64.4%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.66 49.0 4.99e-01 86.8% 78.7%
3738641 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.66 46.0 4.71e-01 89.5% 73.3%
3213725 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.66 48.0 3.26e-01 92.1% 21.5%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.66 48.0 4.64e-01 84.2% 69.4%
3959770 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.65 48.0 4.53e-01 84.2% 65.6%
2755606 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.65 52.0 3.79e-01 90.8% 42.2%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 49.0 3.75e-01 90.8% 34.4%
3233461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 46.0 5.16e-01 82.9% 95.0%
3477401 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.65 52.0 3.72e-01 90.8% 39.6%
3611892 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.65 45.0 3.36e-01 72.4% 42.1%
3575581 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 51.0 4.08e-01 90.8% 58.8%
3706101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 3.63e-01 84.2% 37.1%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.86e-01 88.2% 81.3%
4086268 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 44.0 4.16e-01 76.3% 61.1%
3702177 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.44e-01 84.2% 86.0%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 45.0 4.11e-01 88.2% 56.2%
4016602 4.1.1.179 beta barrels › SH3 › SH3 › SH3 › DUF6590 0.62 48.0 3.95e-01 84.2% 79.7%
3719783 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.63e-01 88.2% 80.9%
3932647 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 49.0 4.80e-01 94.7% 78.8%
3709279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.97e-01 92.1% 84.4%
3749631 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.61 47.0 4.25e-01 82.9% 71.4%
3947700 4.8.1.25 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB 0.61 45.0 4.83e-01 92.1% 98.4%
3689576 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 3.96e-01 89.5% 58.1%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 44.0 4.13e-01 86.8% 61.0%
5027789 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.60 47.0 4.31e-01 84.2% 76.0%
165654 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 45.0 4.59e-01 84.2% 85.1%
5046498 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.59 48.0 3.77e-01 89.5% 42.4%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 43.0 3.94e-01 84.2% 59.0%
3445812 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.92e-01 89.5% 63.6%
3781440 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 43.0 4.33e-01 88.2% 77.5%
3269834 220.1.1.95 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.59 47.0 4.07e-01 89.5% 60.8%
4937389 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.59 41.0 3.68e-01 88.2% 50.9%
3351841 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.59 48.0 4.04e-01 90.8% 68.2%
3804236 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.87e-01 89.5% 60.0%
3285421 9.14.1.0 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.58 41.0 3.38e-01 75.0% 51.7%
3236876 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.58 42.0 2.93e-01 92.1% 21.7%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 43.0 3.84e-01 84.2% 55.5%
3201755 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.57 47.0 3.71e-01 94.7% 88.8%
3315951 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.56 43.0 4.34e-01 85.5% 91.1%
3632407 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.99e-01 92.1% 77.8%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 41.0 3.80e-01 89.5% 61.0%
5018457 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 33.0 3.45e-01 92.1% 64.3%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 42.0 3.94e-01 88.2% 67.4%
3197091 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.55 44.0 3.88e-01 93.4% 95.2%
3182025 4.1.1.475 beta barrels › SH3 › SH3 › SH3 › PF26640 0.54 41.0 3.50e-01 84.2% 48.9%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.54 40.0 4.09e-01 82.9% 88.6%
3637508 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.53 37.0 3.85e-01 92.1% 84.6%
3920375 102.1.1.124 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › CABIT 0.52 42.0 3.45e-01 90.8% 64.2%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.52 38.0 3.88e-01 93.4% 81.3%
3924619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 40.0 3.52e-01 88.2% 55.0%
3974873 219.1.1.35 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › SpvD 0.52 42.0 3.17e-01 93.4% 34.8%
3342304 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.30e-01 89.5% 58.1%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.51 39.0 3.72e-01 88.2% 70.0%
3609894 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.51 37.0 2.94e-01 78.9% 41.6%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.51 39.0 3.81e-01 82.9% 76.5%
3449728 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.51 45.0 3.01e-01 100.0% 69.0%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.51 38.0 3.51e-01 88.2% 62.0%