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NC_022766.1__YP_008770640.1__Glittering_4__00004

Bact-Vir

NC_022766.1__YP_008770640.1__Glittering_4__00004

Identity

Accession:
NC_022766 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ehrlichviridae› Andromedavirus› Bacillus_phage_Glittering

TaxID: 2884421

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-92
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.74 59.0 4.23e-01 100.0% 30.9%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 4.37e-01 97.7% 47.3%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.70 61.0 4.52e-01 100.0% 42.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 46.0 4.52e-01 95.3% 63.8%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 47.0 4.44e-01 95.3% 59.3%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 43.0 4.29e-01 83.7% 60.9%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 51.0 4.12e-01 100.0% 42.9%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 56.0 4.94e-01 97.7% 87.3%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 52.0 3.39e-01 100.0% 20.8%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 54.0 3.93e-01 100.0% 69.0%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.63 52.0 3.82e-01 100.0% 60.2%
2rl8A00 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.63 50.0 3.41e-01 88.4% 67.6%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.38e-01 97.7% 56.9%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.15e-01 95.3% 62.7%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 44.0 3.40e-01 76.7% 32.7%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 49.0 4.69e-01 97.7% 81.8%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.61 37.0 3.12e-01 79.1% 31.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 50.0 4.33e-01 100.0% 64.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 45.0 4.24e-01 100.0% 64.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 3.83e-01 100.0% 44.4%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 41.0 4.01e-01 95.3% 64.7%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 42.0 3.91e-01 88.4% 58.9%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 41.0 3.84e-01 88.4% 58.2%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 4.30e-01 97.7% 87.5%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 39.0 3.33e-01 72.1% 59.5%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 46.0 3.91e-01 97.7% 80.5%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.57 48.0 3.91e-01 100.0% 86.0%
3f9uA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 44.0 3.28e-01 100.0% 81.4%
1eslA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 42.0 3.03e-01 95.3% 42.0%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.38e-01 100.0% 36.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 40.0 3.77e-01 81.4% 64.3%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 39.0 2.71e-01 81.4% 22.2%
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 40.0 2.68e-01 93.0% 97.3%
2g5xA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 41.0 2.90e-01 95.3% 57.0%
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 35.0 3.77e-01 95.3% 88.2%
7vbnL01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.52 43.0 3.49e-01 100.0% 67.4%
1h6qA00 2.170.150.10 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 0.51 36.0 2.56e-01 79.1% 20.2%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 38.0 3.97e-01 100.0% 100.0%
3abgB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 39.0 2.77e-01 93.0% 70.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032233 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.86 64.0 4.64e-01 100.0% 30.4%
4927852 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 61.0 4.80e-01 100.0% 38.9%
3290097 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 63.0 4.91e-01 100.0% 53.7%
3930705 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.71 59.0 4.61e-01 100.0% 42.0%
3512515 247.1.1.45 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_2 0.68 44.0 2.65e-01 72.1% 8.9%
5079023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.79e-01 97.7% 75.6%
3894798 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.68 49.0 4.84e-01 86.0% 75.6%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.52e-01 97.7% 61.8%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.69e-01 97.7% 65.5%
None — 0.67 43.0 2.55e-01 81.4% 9.2%
3620947 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 55.0 5.17e-01 97.7% 76.4%
3464671 4.1.1.136 ↗ beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.66 48.0 4.12e-01 97.7% 48.6%
4056471 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.66 57.0 4.71e-01 100.0% 96.2%
3250764 2.1.1.137 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF6748 0.65 56.0 4.30e-01 100.0% 77.0%
3434453 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.64 45.0 4.75e-01 90.7% 84.2%
3869775 109.4.1.365 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTTN_N 0.64 49.0 2.61e-01 86.0% 6.9%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.39e-01 97.7% 63.6%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.31e-01 97.7% 63.6%
3766119 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 48.0 2.83e-01 86.0% 22.0%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.63 49.0 4.26e-01 100.0% 54.3%
4962086 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.62 41.0 4.23e-01 97.7% 72.5%
3565119 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 47.0 2.48e-01 86.0% 5.6%
1323525 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.62 54.0 3.42e-01 100.0% 21.5%
3260588 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 44.0 4.35e-01 86.0% 72.0%
5017134 208.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.62 44.0 2.93e-01 97.7% 17.4%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 50.0 4.75e-01 100.0% 89.1%
3606532 2484.6.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.61 51.0 4.05e-01 95.3% 52.2%
5058926 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.61 49.0 4.29e-01 100.0% 64.0%
4931741 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.60 40.0 2.85e-01 79.1% 20.7%
4962256 101.1.2.937 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25943 0.59 51.0 3.84e-01 100.0% 62.7%
4938178 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.26e-01 76.7% 80.0%
4582456 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.59 49.0 4.27e-01 97.7% 81.4%
4039724 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.59 48.0 4.33e-01 97.7% 86.2%
3801752 375.1.1.269 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29332 0.59 49.0 4.69e-01 93.0% 94.0%
4429356 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.59 49.0 4.42e-01 100.0% 87.7%
4043601 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.59 50.0 4.44e-01 97.7% 86.2%
3904071 214.1.1.11 ↗ a+b two layers › SH2 › SH2 › SH2 › PF27628 0.58 46.0 3.53e-01 100.0% 82.5%
3881333 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.58 46.0 3.60e-01 100.0% 40.9%
4930686 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 43.0 2.94e-01 81.4% 24.4%
3607612 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 44.0 3.87e-01 90.7% 100.0%
3797433 60.1.2.0 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain 0.57 41.0 2.51e-01 81.4% 13.5%
3553625 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.57 45.0 4.27e-01 100.0% 74.5%
3926425 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.56 47.0 3.70e-01 100.0% 43.0%
4123424 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.56 46.0 2.67e-01 93.0% 64.1%
5044742 375.1.1.95 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.56 40.0 3.62e-01 81.4% 66.2%
3913579 386.1.1.279 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27065 0.54 42.0 3.99e-01 100.0% 72.7%
4104975 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.54 43.0 2.56e-01 90.7% 66.5%
3927286 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 38.0 3.30e-01 79.1% 49.3%
3904142 1155.1.1.1 ↗ few secondary structure elements › Shisa 3 N-terminal domain › Shisa 3 N-terminal domain › Shisa 3 N-terminal domain › Shisa_N 0.54 41.0 3.88e-01 88.4% 98.2%
3628236 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.54 46.0 2.66e-01 97.7% 32.6%
4985994 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.53 42.0 2.54e-01 100.0% 20.0%
4851507 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 38.0 2.67e-01 79.1% 82.1%
3289616 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.52 41.0 2.49e-01 100.0% 20.8%
3531973 376.1.3.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H 0.52 42.0 3.19e-01 97.7% 44.2%
4564673 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.52 40.0 2.44e-01 100.0% 20.4%
3405303 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.51 40.0 2.44e-01 100.0% 18.2%