←Back to structures
NC_022767.1__YP_008770743.1__Staley_29__00029
Bact-VirNC_022767.1__YP_008770743.1__Staley_29__00029
Identity
- Accession:
- NC_022767 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Taxonomy
TaxID: 1406792
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-252
Domain cluster:
rep: MK893987.1__QDF14417.1__X__00120__D134-390
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00149.34 best | Metallophos | 30.8 | 5.60e-07 | 68.1% | 99.0% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a22B00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.83 | 59.0 | 6.55e-01 | 96.8% | 88.2% |
| 3ck2A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.81 | 51.0 | 6.08e-01 | 96.0% | 90.2% |
| 2kknA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.78 | 49.0 | 6.06e-01 | 95.2% | 98.7% |
| 5iheB01 | 3.60.21.50 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.77 | 74.0 | 6.81e-01 | 100.0% | 89.0% |
| 3floA02 | 3.60.21.60 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.69 | 61.0 | 6.21e-01 | 98.4% | 94.6% |
| 3tghA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.69 | 63.0 | 5.79e-01 | 96.0% | 84.8% |
| 3fkfD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 32.0 | 4.20e-01 | 100.0% | 87.6% |
| 3eurA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 31.0 | 4.09e-01 | 100.0% | 85.0% |
| 3ewlB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 31.0 | 4.07e-01 | 100.0% | 86.9% |
| 2hy5B00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.59 | 32.0 | 4.30e-01 | 95.2% | 99.2% |
| 4aweA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 51.0 | 4.48e-01 | 96.0% | 99.5% |
| 1f89A00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.57 | 51.0 | 4.98e-01 | 95.6% | 93.7% |
| 1dljA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 27.0 | 3.87e-01 | 74.9% | 100.0% |
| 3dlaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.56 | 51.0 | 4.67e-01 | 96.0% | 98.4% |
| 1on4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 33.0 | 3.85e-01 | 99.6% | 80.5% |
| 6p0wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 30.0 | 3.96e-01 | 100.0% | 93.3% |
| 3kebB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 31.0 | 3.64e-01 | 100.0% | 75.6% |
| 3wuyA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.56 | 50.0 | 4.83e-01 | 96.8% | 97.9% |
| 3p8kA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.56 | 49.0 | 4.85e-01 | 94.8% | 93.3% |
| 1gg1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 50.0 | 4.55e-01 | 97.2% | 89.4% |
| 5j9bA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 31.0 | 3.69e-01 | 99.2% | 80.4% |
| 1xccD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 32.0 | 4.05e-01 | 99.6% | 95.3% |
| 3w6gA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 31.0 | 3.92e-01 | 100.0% | 93.7% |
| 2dyuA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.55 | 47.0 | 4.51e-01 | 92.8% | 85.7% |
| 3drnB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 32.0 | 3.95e-01 | 96.8% | 94.0% |
| 5k9xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 49.0 | 4.87e-01 | 99.2% | 98.9% |
| 1s2oA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 36.0 | 4.22e-01 | 96.8% | 98.8% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 29.0 | 3.77e-01 | 96.0% | 97.7% |
| 5jx5A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.53 | 46.0 | 4.21e-01 | 92.0% | 94.7% |
| 1jndA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 46.0 | 4.33e-01 | 93.2% | 100.0% |
| 3me8B00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 32.0 | 3.91e-01 | 97.6% | 94.9% |
| 1xvwA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 31.0 | 3.79e-01 | 96.0% | 91.1% |
| 3gkmA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 31.0 | 3.83e-01 | 98.8% | 93.0% |
| 1n8jA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 29.0 | 3.31e-01 | 100.0% | 71.0% |
| 1e2yF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 32.0 | 3.89e-01 | 96.4% | 95.7% |
| 1e5nA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 4.08e-01 | 94.8% | 98.8% |
| 2ap1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 28.0 | 3.65e-01 | 91.2% | 94.2% |
| 1s3aA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 20.0 | 3.23e-01 | 93.6% | 100.0% |
| 2nq5A01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.51 | 44.0 | 3.87e-01 | 94.0% | 93.9% |
| 3pnxA00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.51 | 33.0 | 3.98e-01 | 96.4% | 100.0% |
| 1nltA01 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.51 | 18.0 | 2.93e-01 | 79.3% | 90.0% |
| 2x6qA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 35.0 | 3.91e-01 | 98.8% | 90.4% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080277 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.92 | 88.0 | 8.92e-01 | 97.6% | 100.0% |
| 5042274 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.79 | 74.0 | 6.86e-01 | 97.6% | 96.4% |
| 4995790 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.79 | 73.0 | 7.04e-01 | 96.4% | 97.1% |
| 5022422 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.78 | 75.0 | 6.82e-01 | 100.0% | 92.5% |
| 4937076 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.78 | 75.0 | 7.01e-01 | 100.0% | 99.0% |
| 5053888 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.77 | 74.0 | 6.99e-01 | 99.2% | 98.6% |
| 5038520 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.77 | 74.0 | 6.68e-01 | 98.8% | 90.9% |
| 4956523 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.77 | 74.0 | 7.03e-01 | 99.2% | 98.2% |
| 3632270 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.72 | 69.0 | 5.71e-01 | 100.0% | 89.9% |
| 3258632 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.70 | 66.0 | 5.70e-01 | 98.0% | 82.5% |
| 3251783 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.70 | 65.0 | 5.94e-01 | 97.6% | 93.3% |
| 5033616 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.70 | 61.0 | 6.03e-01 | 94.8% | 87.6% |
| 3954320 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.69 | 64.0 | 5.57e-01 | 97.6% | 94.8% |
| 4946924 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.69 | 61.0 | 6.17e-01 | 96.0% | 92.8% |
| 5031035 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.68 | 60.0 | 6.25e-01 | 94.8% | 97.9% |
| 3675288 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.68 | 63.0 | 5.90e-01 | 97.2% | 91.3% |
| 3412443 | 246.2.1.5 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,ASMase_C | 0.68 | 61.0 | 5.03e-01 | 94.8% | 78.9% |
| 3272705 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.67 | 64.0 | 5.90e-01 | 100.0% | 87.5% |
| 3282980 | 246.2.1.8 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PhoD | 0.67 | 61.0 | 5.29e-01 | 96.4% | 96.8% |
| 3494146 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.67 | 62.0 | 5.85e-01 | 96.4% | 88.6% |
| 4953543 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.66 | 57.0 | 5.83e-01 | 93.6% | 92.1% |
| 4977727 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.66 | 61.0 | 6.10e-01 | 96.8% | 93.8% |
| 5033392 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.66 | 60.0 | 5.56e-01 | 95.6% | 87.7% |
| 3310233 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.65 | 62.0 | 5.54e-01 | 100.0% | 92.2% |
| 3595720 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.65 | 57.0 | 5.39e-01 | 92.4% | 100.0% |
| 3483412 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.64 | 56.0 | 5.51e-01 | 91.6% | 100.0% |
| 4975753 | 7545.1.1.1 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE | 0.64 | 32.0 | 4.50e-01 | 80.5% | 100.0% |
| 5078353 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.62 | 54.0 | 5.56e-01 | 90.4% | 100.0% |
| 5072662 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.61 | 28.0 | 3.74e-01 | 100.0% | 78.5% |
| 4940442 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.59 | 55.0 | 5.10e-01 | 100.0% | 82.2% |
| 5075921 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.58 | 55.0 | 5.19e-01 | 100.0% | 88.8% |
| 2667647 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.57 | 50.0 | 4.72e-01 | 94.4% | 89.1% |
| 5047395 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.57 | 26.0 | 3.72e-01 | 85.3% | 92.7% |
| 4972403 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.57 | 32.0 | 3.48e-01 | 91.2% | 61.9% |
| 4531635 | 2003.1.12.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › UDPG/MGDP dehydrogenase C-terminal domain › UDPG_MGDP_dh_C | 0.56 | 23.0 | 3.10e-01 | 96.8% | 69.2% |
| 5004036 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.55 | 28.0 | 3.92e-01 | 77.7% | 99.2% |
| 5055610 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.54 | 29.0 | 3.84e-01 | 91.6% | 94.1% |
| 144575 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.54 | 28.0 | 3.83e-01 | 96.0% | 96.9% |
| 3502204 | 3315.1.1.1 ↗ | a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41 | 0.54 | 18.0 | 2.85e-01 | 87.3% | 74.0% |
| 1144534 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.52 | 39.0 | 4.20e-01 | 77.3% | 99.5% |
| 4564456 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.52 | 34.0 | 3.91e-01 | 98.8% | 90.6% |
| 11007 | 2008.1.1.8 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › BamHI | 0.51 | 32.0 | 3.58e-01 | 83.7% | 78.0% |
| 4524961 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.51 | 30.0 | 3.77e-01 | 88.0% | 96.0% |