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NC_022768.1__YP_008770868.1__Maynard_41__00041

Bact-Vir

NC_022768.1__YP_008770868.1__Maynard_41__00041

Identity

Accession:
NC_022768 ↗
Kingdom:
phage

Quality

68.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Kuttervirus› Salmonella_phage_Maynard

TaxID: 1406795

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 524-690
PDB
D2 high residues 718-787
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.87 79.0 7.17e-01 98.6% 78.3%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.85 75.0 6.81e-01 95.7% 77.2%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.83 75.0 6.88e-01 100.0% 76.4%
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.81 73.0 6.40e-01 100.0% 79.6%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.80 71.0 6.06e-01 98.6% 61.5%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.69 36.0 4.46e-01 78.6% 81.8%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.67 37.0 4.60e-01 95.7% 90.7%
4f7kA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.67 54.0 4.61e-01 88.6% 64.9%
6iw2A01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.65 48.0 3.88e-01 100.0% 41.4%
1pf3A03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.64 51.0 4.06e-01 88.6% 77.2%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.64 47.0 4.09e-01 80.0% 99.1%
2q7dA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 46.0 3.30e-01 77.1% 50.5%
1byoA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 49.0 4.46e-01 90.0% 79.8%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 45.0 4.05e-01 91.4% 57.9%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 37.0 3.45e-01 95.7% 50.0%
1svbA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.57 42.0 3.46e-01 80.0% 95.6%
2wnkA02 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.57 43.0 3.86e-01 85.7% 97.2%
1ujcA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.56 45.0 3.71e-01 100.0% 66.0%
1kzqA01 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.55 43.0 3.71e-01 92.9% 96.9%
3mxnA01 2.40.50.510 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 45.0 4.30e-01 100.0% 80.0%
2wnkA01 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.54 43.0 3.68e-01 90.0% 76.1%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 35.0 3.30e-01 88.6% 54.0%
3kg5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.39e-01 78.6% 67.0%
3urrA00 3.40.930.10 Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A 0.52 45.0 3.56e-01 100.0% 74.3%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.52 45.0 3.01e-01 100.0% 68.5%
3dlqR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.27e-01 87.1% 52.0%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.51 37.0 3.64e-01 77.1% 98.7%
3dclA01 2.102.30.10 Mainly Beta › 3-layer Sandwich › tm1086 (SG structure) fold › tm1086 (SG structure) domain 0.51 45.0 3.53e-01 100.0% 56.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581338 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.87 81.0 7.17e-01 100.0% 76.0%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.85 75.0 6.78e-01 95.7% 76.3%
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.84 73.0 6.69e-01 95.7% 74.7%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.83 76.0 6.81e-01 100.0% 77.7%
3227518 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 51.0 4.42e-01 80.0% 93.6%
3220750 10.4.1.19 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein 0.66 54.0 4.56e-01 91.4% 88.3%
3225227 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.66 45.0 3.97e-01 71.4% 100.0%
3629516 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 53.0 4.84e-01 91.4% 85.3%
4018618 3156.1.1.4 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase 0.64 57.0 3.81e-01 98.6% 88.7%
3936620 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 51.0 4.50e-01 91.4% 88.2%
3617437 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 52.0 4.44e-01 91.4% 78.3%
3931532 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.64 50.0 4.48e-01 91.4% 91.7%
3927274 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 51.0 4.26e-01 91.4% 75.4%
3923921 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.63 50.0 4.22e-01 91.4% 76.7%
3933405 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 50.0 4.08e-01 91.4% 68.3%
3932545 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.63 50.0 4.45e-01 91.4% 89.8%
3923959 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.63 50.0 4.36e-01 91.4% 86.1%
3217569 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.63 51.0 4.68e-01 91.4% 89.5%
3701894 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 49.0 4.17e-01 88.6% 80.0%
4001290 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.62 50.0 4.16e-01 91.4% 68.9%
3575229 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.62 49.0 4.05e-01 91.4% 68.6%
3609844 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 3.53e-01 80.0% 99.3%
3840065 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.60 51.0 3.63e-01 100.0% 35.4%
3395219 4312.2.1.1 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like › TrmO_C 0.59 39.0 3.83e-01 88.6% 62.7%
3523850 10.32.1.226 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Tenm3 0.59 47.0 3.87e-01 91.4% 87.1%
5007064 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.58 37.0 3.63e-01 88.6% 61.3%
4081958 2.1.1.275 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF31102 0.57 50.0 3.63e-01 100.0% 86.3%
4031839 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.57 41.0 3.09e-01 75.7% 98.2%
3306448 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 51.0 3.82e-01 100.0% 84.1%
4001937 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.54 45.0 3.09e-01 91.4% 45.4%
3739833 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 47.0 4.09e-01 100.0% 86.4%
3974761 311.1.1.0 ↗ a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein 0.53 46.0 3.64e-01 100.0% 76.0%
1266858 3156.3.1.1 ↗ beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › SAG 0.53 42.0 3.69e-01 91.4% 80.5%
4966674 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.53 34.0 3.20e-01 88.6% 54.1%
3238618 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 43.0 2.70e-01 90.0% 29.4%
145838 311.1.1.1 ↗ a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.52 45.0 3.56e-01 100.0% 74.3%
5014147 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.52 36.0 3.49e-01 90.0% 63.7%
4966983 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.51 39.0 3.75e-01 91.4% 71.2%
3939218 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.51 42.0 2.66e-01 90.0% 30.3%
4994192 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.51 37.0 3.59e-01 91.4% 67.5%
3478904 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 2.96e-01 77.1% 60.7%
3912292 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.51 42.0 2.69e-01 91.4% 24.9%
180695 3114.1.1.3 ↗ beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › Muc_B2 0.51 40.0 3.58e-01 85.7% 89.0%
4987659 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.51 40.0 3.71e-01 85.7% 96.7%
4861488 5090.1.1.1 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot 0.51 44.0 2.92e-01 100.0% 45.7%
4968316 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.50 38.0 3.51e-01 91.4% 63.6%
200712 858.1.1.2 ↗ a+b three layers › CytB endotoxin-like (Pfam 01338) › CytB endotoxin-like (Pfam 01338) › CytB endotoxin-like (Pfam 01338) › Evf 0.50 44.0 3.00e-01 100.0% 68.5%
D3 medium residues 12-160
PDB
Domain cluster: rep: OY978777.1__CAK6596089.1__K71PH129C1_LOCUS55__00055__D152-272
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18668.7 best Tail_spike_N 75.7 3.40e-21 45.0% 95.7%
D4 medium residues 297-418
PDB
D5 medium residues 419-469
PDB