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NC_022769.1__YP_008771148.1__BigBertha_121__00121

Bact-Vir

NC_022769.1__YP_008771148.1__BigBertha_121__00121

Identity

Accession:
NC_022769 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bequatrovirus› Bacillus_phage_BigBertha

TaxID: 1406781

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 4.78e-01 94.7% 78.5%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.91e-01 94.7% 96.9%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.50e-01 94.7% 75.0%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.61e-01 96.0% 85.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.73e-01 92.0% 100.0%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.83e-01 94.7% 91.7%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.02e-01 92.0% 66.3%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.57 37.0 3.14e-01 74.7% 37.6%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 3.81e-01 97.3% 52.9%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.57 41.0 4.07e-01 77.3% 79.0%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 4.06e-01 98.7% 97.8%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.75e-01 88.0% 90.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.55 46.0 3.41e-01 96.0% 72.3%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.01e-01 93.3% 80.0%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 38.0 2.55e-01 73.3% 40.3%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 41.0 3.30e-01 82.7% 94.8%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.79e-01 76.0% 100.0%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 43.0 3.88e-01 90.7% 96.3%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 37.0 2.58e-01 73.3% 43.1%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.57e-01 81.3% 94.4%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 41.0 3.74e-01 85.3% 76.5%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.44e-01 90.7% 98.7%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.61e-01 88.0% 85.1%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 39.0 3.58e-01 85.3% 80.2%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.51 42.0 3.58e-01 96.0% 83.9%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 40.0 3.50e-01 89.3% 68.3%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.52e-01 85.3% 77.5%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 43.0 3.05e-01 93.3% 31.2%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.51 39.0 3.30e-01 88.0% 68.3%
2dslA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 36.0 3.14e-01 74.7% 87.0%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 36.0 2.95e-01 77.3% 78.8%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.60e-01 90.7% 89.2%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.50 38.0 3.24e-01 84.0% 92.6%
1ej8A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.50 39.0 3.25e-01 86.7% 100.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979903 4.1.1.465 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_6, SH3_7 0.63 51.0 3.53e-01 93.3% 25.1%
3808601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.93e-01 96.0% 91.8%
4882197 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.59 50.0 4.36e-01 97.3% 60.2%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 48.0 4.51e-01 93.3% 82.1%
3834112 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 47.0 4.70e-01 94.7% 95.0%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.57 41.0 4.29e-01 90.7% 84.3%
3990703 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 43.0 3.44e-01 84.0% 69.1%
3770448 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 39.0 3.09e-01 73.3% 66.5%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 43.0 4.55e-01 88.0% 98.5%
5037223 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.55 33.0 3.61e-01 70.7% 75.0%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.45e-01 93.3% 100.0%
4655719 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 42.0 4.00e-01 92.0% 72.2%
3170740 220.1.1.83 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_N 0.54 39.0 3.06e-01 80.0% 71.1%
4544762 11.1.4.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.54 40.0 3.84e-01 81.3% 92.1%
4492826 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 36.0 3.21e-01 76.0% 45.2%
3604640 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.53 46.0 3.27e-01 100.0% 78.4%
3273846 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 47.0 3.15e-01 100.0% 82.7%
4929824 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 38.0 3.14e-01 81.3% 39.3%
3177446 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 46.0 2.99e-01 98.7% 77.0%
185990 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.53 40.0 3.54e-01 82.7% 75.2%
3197517 219.1.1.129 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 0.53 45.0 3.96e-01 100.0% 67.8%
3721314 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.53 45.0 3.96e-01 97.3% 100.0%
3761570 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.53 38.0 3.34e-01 76.0% 52.2%
5033989 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 32.0 3.58e-01 100.0% 81.8%
5040907 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 42.0 3.06e-01 92.0% 97.0%
3890362 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.92e-01 80.0% 90.0%
3200646 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.52 41.0 3.73e-01 88.0% 90.5%
3599855 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 44.0 2.92e-01 96.0% 86.4%
3173222 4075.1.1.0 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain 0.52 41.0 3.64e-01 89.3% 100.0%
999030 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.51 39.0 3.61e-01 85.3% 83.5%
3938060 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 36.0 2.76e-01 74.7% 52.0%
3680919 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 41.0 3.66e-01 94.7% 98.3%
3754415 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 40.0 3.25e-01 90.7% 67.1%
3446652 331.3.1.40 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 0.50 42.0 3.23e-01 96.0% 82.7%