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NC_022771.1__YP_008771574.1__Grass_208__00208

Bact-Vir

NC_022771.1__YP_008771574.1__Grass_208__00208

Identity

Accession:
NC_022771 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-145
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.70 45.0 4.28e-01 77.3% 56.2%
3ndcA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.68 44.0 4.11e-01 80.4% 52.8%
1wyzA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.64 38.0 3.70e-01 78.4% 51.8%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 42.0 4.76e-01 80.4% 97.0%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.62 41.0 3.94e-01 77.3% 58.2%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 41.0 3.77e-01 83.5% 53.2%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 41.0 3.84e-01 82.5% 55.4%
3ethA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 35.0 4.13e-01 81.4% 88.7%
2e6xA00 3.10.20.570 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3248 0.59 31.0 3.58e-01 79.4% 69.1%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.59 45.0 3.95e-01 81.4% 84.6%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 42.0 3.77e-01 86.6% 51.8%
1pjqB05 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 40.0 3.73e-01 86.6% 55.6%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 49.0 3.76e-01 96.9% 66.0%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.64e-01 89.7% 82.5%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 3.81e-01 74.2% 88.8%
3nutB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.56 42.0 3.84e-01 84.5% 59.4%
6zxbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 42.0 3.76e-01 81.4% 87.5%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 4.23e-01 89.7% 80.6%
1uc6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.29e-01 87.6% 81.7%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 4.12e-01 89.7% 74.8%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.51e-01 89.7% 96.5%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 39.0 2.81e-01 76.3% 50.6%
1vhvA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 36.0 3.26e-01 82.5% 47.5%
4gs7C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.37e-01 86.6% 86.7%
2zvbA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 42.0 3.89e-01 84.5% 82.0%
3g7mA00 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.54 40.0 3.47e-01 90.7% 50.3%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 47.0 3.32e-01 100.0% 92.8%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.50e-01 89.7% 92.5%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 48.0 3.16e-01 100.0% 84.3%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.26e-01 89.7% 83.7%
3wihA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 4.11e-01 83.5% 86.4%
1f6fB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.27e-01 89.7% 87.6%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.28e-01 89.7% 88.2%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 38.0 3.57e-01 76.3% 94.1%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 39.0 4.00e-01 83.5% 83.2%
1fnfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.20e-01 86.6% 88.3%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.99e-01 86.6% 88.9%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.29e-01 76.3% 82.3%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 4.00e-01 87.6% 87.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1937092 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.69 45.0 4.28e-01 77.3% 56.2%
4327532 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.69 45.0 4.25e-01 79.4% 54.2%
5011699 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.68 42.0 4.07e-01 76.3% 54.5%
5025546 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.68 43.0 3.87e-01 82.5% 46.9%
3965447 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.68 41.0 3.94e-01 75.3% 51.3%
3662726 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.68 43.0 4.08e-01 77.3% 53.9%
4138490 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.68 43.0 4.08e-01 77.3% 53.9%
4280213 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.68 42.0 4.10e-01 76.3% 55.5%
4398420 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.67 45.0 4.19e-01 78.4% 55.0%
4521662 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.67 43.0 4.01e-01 77.3% 51.7%
3989417 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.67 43.0 4.18e-01 80.4% 57.3%
3837973 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.67 43.0 3.93e-01 77.3% 49.6%
5019905 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.67 41.0 4.01e-01 80.4% 56.2%
4386724 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.66 42.0 4.04e-01 77.3% 55.5%
3964762 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.66 43.0 4.00e-01 78.4% 52.0%
1937720 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.66 43.0 4.06e-01 77.3% 54.6%
4624792 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.65 41.0 3.93e-01 78.4% 53.9%
4107956 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.65 42.0 3.97e-01 78.4% 53.3%
3600733 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.65 44.0 3.92e-01 78.4% 48.6%
4935534 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.63 42.0 3.87e-01 79.4% 52.0%
4930268 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.63 39.0 3.76e-01 78.4% 53.6%
3730441 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.63 50.0 3.44e-01 86.6% 83.4%
4486768 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.63 40.0 3.85e-01 77.3% 55.5%
4316382 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.63 39.0 3.80e-01 78.4% 54.5%
4986413 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.63 36.0 3.72e-01 77.3% 57.4%
4489065 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.62 42.0 3.85e-01 82.5% 52.8%
4961361 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.62 41.0 3.89e-01 83.5% 55.0%
5011710 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.62 42.0 3.81e-01 83.5% 50.4%
3290857 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.61 41.0 3.83e-01 83.5% 53.1%
4197453 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.61 41.0 3.80e-01 83.5% 52.3%
1937525 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.61 40.0 3.75e-01 83.5% 52.8%
4033790 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.61 42.0 3.88e-01 82.5% 55.2%
4681160 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.60 41.0 3.76e-01 83.5% 53.1%
3196133 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.59 52.0 3.69e-01 100.0% 87.5%
5034902 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 36.0 3.18e-01 70.1% 41.4%
4541620 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.59 50.0 3.77e-01 96.9% 65.5%
3783674 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.59 40.0 3.70e-01 83.5% 53.1%
4538391 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.58 41.0 3.63e-01 86.6% 48.7%
4064446 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.57 41.0 3.68e-01 89.7% 54.1%
4588679 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.56 47.0 3.61e-01 96.9% 65.7%
3587259 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.55 43.0 4.47e-01 84.5% 90.0%
4011588 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.55 38.0 4.28e-01 76.3% 93.3%
5018298 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 40.0 3.82e-01 77.3% 82.6%
3585350 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 45.0 4.36e-01 89.7% 84.5%
3603767 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 40.0 3.92e-01 77.3% 81.9%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 36.0 3.97e-01 70.1% 86.7%
3595984 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 3.07e-01 100.0% 61.1%
4928621 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 34.0 3.10e-01 70.1% 44.3%
185296 862.1.1.4 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase 0.52 45.0 3.61e-01 96.9% 74.9%
3364575 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 40.0 3.37e-01 81.4% 51.8%
4518176 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 37.0 3.37e-01 97.9% 57.6%
4647653 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 43.0 2.89e-01 95.9% 98.8%
3220964 10.32.1.218 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.50 36.0 3.31e-01 77.3% 68.9%