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NC_022915.1__YP_008853798.1__X532_gp13__00013

Bact-Vir

NC_022915.1__YP_008853798.1__X532_gp13__00013

Identity

Accession:
NC_022915 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Firingavirus› Ralstonia_phage_RSK1

TaxID: 1417599

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-207
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00215__D84-244
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.84 52.0 5.91e-01 70.0% 80.6%
4e2gC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.81 54.0 5.71e-01 76.4% 75.4%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.80 53.0 5.98e-01 73.6% 86.4%
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.80 53.0 5.91e-01 76.4% 84.7%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.79 54.0 5.92e-01 74.3% 83.6%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.78 52.0 6.00e-01 76.4% 91.3%
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 53.0 5.69e-01 72.1% 80.3%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 51.0 5.77e-01 70.0% 86.2%
4e2qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 52.0 4.18e-01 70.0% 37.6%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 53.0 4.30e-01 70.7% 40.0%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 54.0 6.28e-01 75.0% 99.0%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 50.0 5.69e-01 70.0% 87.6%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 58.0 5.56e-01 78.6% 83.6%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 53.0 5.86e-01 77.1% 86.8%
2d40B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 56.0 4.34e-01 75.7% 38.7%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 52.0 5.71e-01 73.6% 85.2%
1sefA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 52.0 5.42e-01 70.7% 74.8%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 50.0 6.00e-01 74.3% 98.9%
1sq4A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 53.0 5.26e-01 71.4% 69.4%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 56.0 5.62e-01 77.1% 89.5%
2e9qA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 61.0 5.17e-01 85.0% 80.2%
3bu7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 55.0 3.98e-01 75.0% 32.1%
4b29A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 57.0 5.02e-01 78.6% 56.9%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 54.0 5.89e-01 75.0% 92.4%
3c3vA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 60.0 4.96e-01 84.3% 75.9%
3njzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 57.0 4.12e-01 80.7% 31.6%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 51.0 5.40e-01 72.9% 77.8%
5wxuD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 61.0 5.01e-01 85.0% 73.9%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 52.0 5.46e-01 71.4% 92.1%
3myxB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 49.0 5.26e-01 75.7% 77.9%
1o4tA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 52.0 5.71e-01 75.7% 87.8%
2o8qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 50.0 5.40e-01 75.0% 80.3%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 60.0 5.43e-01 85.0% 85.6%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 58.0 5.20e-01 82.1% 82.2%
5cu1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 57.0 5.03e-01 86.4% 57.9%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 58.0 5.27e-01 83.6% 84.2%
2qdrA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 50.0 3.92e-01 77.9% 35.3%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 57.0 5.23e-01 82.1% 78.3%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 50.0 5.08e-01 70.7% 76.8%
1y3tA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 56.0 5.35e-01 80.7% 78.1%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 54.0 5.59e-01 84.3% 81.3%
1y3tA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 57.0 5.32e-01 82.9% 72.9%
3eqeA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 53.0 5.14e-01 80.7% 69.2%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 57.0 5.24e-01 83.6% 87.6%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 55.0 5.03e-01 80.7% 72.0%
3ht1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 55.0 5.52e-01 85.7% 78.9%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 47.0 5.11e-01 72.9% 79.8%
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 57.0 5.36e-01 84.3% 89.1%
2o1qA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 54.0 5.67e-01 79.3% 90.6%
1gqgC01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 54.0 5.43e-01 79.3% 80.0%
3ibmB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 53.0 5.27e-01 78.6% 82.9%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 57.0 5.29e-01 85.0% 89.9%
3ebrA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 53.0 5.10e-01 78.6% 71.2%
3cjxA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 52.0 5.15e-01 78.6% 77.3%
5bpxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 51.0 5.01e-01 77.9% 73.9%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 56.0 5.44e-01 87.1% 88.5%
3aclA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 48.0 5.20e-01 72.1% 98.3%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 54.0 4.25e-01 85.7% 47.6%
3l2hA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 52.0 5.14e-01 82.9% 83.0%
5e16A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 4.14e-01 76.4% 94.9%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.54 26.0 3.09e-01 77.1% 63.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048934 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.83 54.0 6.25e-01 73.6% 89.3%
4977180 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.83 54.0 6.38e-01 73.6% 93.0%
3386919 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.82 57.0 6.36e-01 77.1% 89.1%
4990903 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.82 58.0 6.64e-01 81.4% 97.1%
4955762 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.82 55.0 6.07e-01 76.4% 84.1%
5043831 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.81 56.0 6.26e-01 70.7% 89.1%
4419958 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.81 54.0 5.82e-01 74.3% 79.2%
5051145 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.81 51.0 5.71e-01 75.0% 80.9%
148966 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.80 54.0 5.92e-01 76.4% 82.6%
2084843 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.80 58.0 6.02e-01 73.6% 81.5%
4950350 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.80 52.0 5.93e-01 70.0% 86.7%
4933556 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.80 54.0 6.03e-01 74.3% 87.3%
164075 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.80 53.0 5.88e-01 76.4% 83.9%
5026281 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.79 54.0 6.08e-01 70.7% 88.2%
200089 10.12.1.27 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.79 54.0 5.92e-01 74.3% 83.6%
4978020 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.79 52.0 6.01e-01 70.7% 90.3%
4132202 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.79 52.0 5.93e-01 80.0% 87.0%
4965910 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.79 56.0 6.02e-01 77.9% 84.2%
5001494 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.78 53.0 5.96e-01 73.6% 88.2%
4283552 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.78 55.0 4.05e-01 72.9% 31.9%
5031628 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.78 55.0 5.93e-01 80.0% 84.2%
5062005 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.77 53.0 5.68e-01 72.9% 80.8%
135836 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.77 54.0 5.43e-01 72.1% 71.3%
3943746 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.77 54.0 5.78e-01 76.4% 83.3%
5009706 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.77 56.0 5.88e-01 84.3% 83.2%
2080774 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.77 53.0 5.72e-01 70.7% 83.1%
3280944 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.77 51.0 5.38e-01 71.4% 75.2%
3505893 10.12.1.21 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R 0.76 49.0 5.14e-01 73.6% 70.0%
1180027 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.76 56.0 5.61e-01 75.7% 76.9%
3281599 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.76 56.0 6.01e-01 76.4% 87.1%
1329 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.76 51.0 5.95e-01 70.0% 96.0%
3519413 10.12.1.21 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R 0.76 56.0 5.07e-01 90.7% 57.8%
4529679 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.76 56.0 4.09e-01 75.7% 32.8%
3726945 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.76 58.0 5.80e-01 78.6% 93.6%
3688349 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.76 55.0 5.91e-01 78.6% 86.7%
4473257 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.75 53.0 5.70e-01 71.4% 90.0%
4590825 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.75 57.0 5.89e-01 80.7% 83.1%
4659356 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.75 52.0 5.73e-01 70.7% 87.0%
4465727 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.75 56.0 5.85e-01 84.3% 83.1%
2103512 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.75 52.0 5.58e-01 81.4% 81.8%
1180035 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.75 55.0 5.52e-01 75.0% 82.0%
1180018 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.75 57.0 5.86e-01 80.0% 82.2%
5019570 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.74 52.0 5.57e-01 80.7% 82.5%
5026683 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.74 54.0 5.80e-01 82.1% 86.7%
4164755 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.73 61.0 5.39e-01 87.9% 76.4%
4955761 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.72 56.0 5.83e-01 80.7% 89.8%
3725115 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.71 54.0 5.16e-01 77.9% 68.6%
3973376 10.12.1.14 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C 0.71 50.0 3.97e-01 72.1% 91.4%
3215715 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.70 51.0 5.74e-01 75.7% 95.5%
3729398 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.70 54.0 4.06e-01 80.7% 38.5%
5010256 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.70 55.0 5.01e-01 82.1% 62.8%