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NC_022983.1__YP_008858978.1__X818_gp052__00052
Bact-VirNC_022983.1__YP_008858978.1__X818_gp052__00052
Identity
- Accession:
- NC_022983 ↗
- Kingdom:
- phage
Quality
67.8
mean pLDDT
Taxonomy
TaxID: 1429903
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-71
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.71 | 59.0 | 5.05e-01 | 95.9% | 76.8% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.67 | 56.0 | 3.96e-01 | 100.0% | 49.1% |
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.64 | 50.0 | 3.75e-01 | 100.0% | 33.1% |
| 3vpbA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.60 | 48.0 | 4.49e-01 | 100.0% | 71.0% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 46.0 | 3.97e-01 | 98.0% | 57.6% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 45.0 | 3.90e-01 | 98.0% | 57.4% |
| 2w82A01 | 3.10.20.480 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Antirestriction protein ArdA, domain 1 | 0.57 | 46.0 | 4.43e-01 | 100.0% | 83.1% |
| 4mamA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 44.0 | 3.90e-01 | 98.0% | 55.6% |
| 3orqA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 41.0 | 3.90e-01 | 98.0% | 68.3% |
| 3k5iA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 40.0 | 3.74e-01 | 98.0% | 61.4% |
| 2i50A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 38.0 | 3.09e-01 | 100.0% | 36.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3842874 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.73 | 62.0 | 4.90e-01 | 100.0% | 45.7% |
| 3488019 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.65 | 54.0 | 3.97e-01 | 100.0% | 37.5% |
| 3782773 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.65 | 49.0 | 4.84e-01 | 100.0% | 80.0% |
| 3382922 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.64 | 44.0 | 2.61e-01 | 73.5% | 49.3% |
| 3929887 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.61 | 52.0 | 4.07e-01 | 100.0% | 46.4% |
| 4583560 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 45.0 | 4.62e-01 | 93.9% | 100.0% |
| 4962335 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.59 | 47.0 | 4.42e-01 | 98.0% | 80.0% |
| 3700503 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 2.93e-01 | 100.0% | 20.0% |
| 3609261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 43.0 | 3.48e-01 | 100.0% | 39.0% |
| 5030919 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.58 | 39.0 | 3.16e-01 | 75.5% | 42.6% |
| 3236583 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 44.0 | 3.42e-01 | 100.0% | 63.1% |
| 4930843 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.54 | 46.0 | 3.81e-01 | 98.0% | 97.8% |
| 3177860 | 11.1.5.98 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SPT23_MGA2_DBD | 0.53 | 42.0 | 2.94e-01 | 100.0% | 48.4% |
| 3679857 | 109.4.1.2337 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif, TPR_24 | 0.52 | 45.0 | 2.65e-01 | 98.0% | 17.8% |
| 3709464 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.51 | 39.0 | 3.65e-01 | 100.0% | 98.7% |