←Back to structures

NC_023007.1__YP_008873279.1__X915_gp037__00037

Bact-Vir

NC_023007.1__YP_008873279.1__X915_gp037__00037

Identity

Accession:
NC_023007 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tsamsavirus› Bacillus_phage_vB_BanS-Tsamsa

TaxID: 1308863

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-51
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hl4A01 1.10.8.1310 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.80 63.0 4.53e-01 89.8% 34.2%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.79 66.0 5.21e-01 95.9% 53.8%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 57.0 5.61e-01 100.0% 75.9%
3tw6B03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.75 57.0 3.22e-01 100.0% 7.8%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.75 52.0 3.45e-01 73.5% 18.6%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.75 56.0 4.46e-01 79.6% 58.5%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 51.0 4.87e-01 73.5% 71.9%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.73 58.0 5.02e-01 93.9% 60.2%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 60.0 5.19e-01 100.0% 75.0%
4tq1A03 1.10.246.190 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Autophagy protein Apg5, helix rich domain 0.72 63.0 5.98e-01 100.0% 100.0%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 4.39e-01 71.4% 56.1%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 57.0 5.01e-01 100.0% 60.2%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.70 54.0 4.80e-01 100.0% 58.1%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.70 59.0 5.30e-01 100.0% 87.7%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.69 58.0 5.43e-01 100.0% 82.5%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 56.0 5.09e-01 100.0% 66.7%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 50.0 4.10e-01 77.6% 42.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.69 56.0 5.38e-01 95.9% 100.0%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.69 58.0 5.49e-01 98.0% 93.2%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.68 56.0 4.93e-01 100.0% 84.0%
5fmgF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 46.0 3.04e-01 73.5% 17.4%
2ejsA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 54.0 5.14e-01 95.9% 79.3%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.64 55.0 4.09e-01 100.0% 42.5%
3bg5B07 1.10.10.2790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 48.0 4.89e-01 98.0% 91.3%
4g3vA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 45.0 3.15e-01 75.5% 84.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.25e-01 89.8% 75.3%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 46.0 4.15e-01 77.6% 66.2%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.64 51.0 4.73e-01 100.0% 71.8%
3fd9A01 1.10.8.520 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ExsD N-terminal domain-like 0.63 52.0 4.68e-01 95.9% 68.1%
1af7A01 1.10.155.10 Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.60 47.0 4.15e-01 91.8% 86.3%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.58 45.0 4.52e-01 89.8% 100.0%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 46.0 3.22e-01 95.9% 98.4%
1r71A02 6.10.250.140 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 46.0 4.37e-01 98.0% 77.6%
2q14B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 47.0 3.12e-01 100.0% 51.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 38.0 3.25e-01 71.4% 50.6%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.73e-01 93.9% 73.9%
8jj7A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.65e-01 93.9% 76.1%
3vpzA02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.53 40.0 2.78e-01 89.8% 23.0%
1sz2A02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.53 43.0 2.97e-01 95.9% 23.5%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.52 44.0 3.41e-01 93.9% 44.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3617570 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.90 64.0 4.33e-01 75.5% 23.1%
3989035 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.79 68.0 5.44e-01 95.9% 65.3%
1177434 103.5.1.1 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › PYC_OADA 0.77 56.0 5.82e-01 98.0% 86.7%
1639050 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.77 55.0 5.76e-01 91.8% 86.4%
4048400 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.77 68.0 5.62e-01 98.0% 70.6%
3945748 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.76 64.0 5.19e-01 95.9% 95.8%
5074088 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.73 48.0 3.14e-01 87.8% 16.6%
3230385 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 63.0 5.06e-01 100.0% 53.7%
3249392 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 57.0 5.30e-01 91.8% 78.5%
3373467 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.71 58.0 4.69e-01 100.0% 54.3%
3254545 103.11.1.0 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related 0.70 57.0 5.60e-01 100.0% 96.4%
3939983 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.69 58.0 4.44e-01 100.0% 47.2%
4067861 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 56.0 4.75e-01 93.9% 57.6%
4121495 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 55.0 4.91e-01 98.0% 62.7%
3385989 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.68 57.0 5.18e-01 100.0% 70.0%
4089409 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 56.0 4.94e-01 100.0% 61.3%
4246144 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 56.0 4.90e-01 100.0% 61.3%
3379162 148.1.3.227 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7750 0.67 57.0 5.18e-01 100.0% 71.4%
3604666 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.33e-01 95.9% 96.4%
3788953 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.66 54.0 4.62e-01 100.0% 88.9%
4505497 103.5.1.1 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › PYC_OADA 0.66 51.0 4.79e-01 100.0% 69.2%
4383903 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.65 52.0 4.81e-01 100.0% 70.0%
4458447 148.1.3.21 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 0.65 52.0 4.83e-01 100.0% 74.3%
3244215 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 52.0 4.98e-01 98.0% 88.3%
3603655 2004.1.1.66 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.64 52.0 3.30e-01 100.0% 16.6%
5023893 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.64 51.0 3.41e-01 98.0% 26.0%
3224902 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.64 48.0 4.45e-01 83.7% 61.5%
3782810 103.1.1.14 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.63 49.0 4.93e-01 89.8% 98.0%
2142130 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.63 52.0 3.72e-01 100.0% 32.7%
5030554 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.63 49.0 3.64e-01 93.9% 38.5%
3587655 829.1.1.0 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB 0.62 54.0 4.73e-01 100.0% 90.7%
4941193 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 47.0 3.90e-01 85.7% 76.5%
4982049 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 43.0 4.25e-01 83.7% 90.9%
4956012 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 50.0 4.01e-01 100.0% 72.4%
5007277 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 49.0 4.07e-01 93.9% 82.4%
4305197 1197.1.1.1 ↗ alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.55 44.0 3.01e-01 95.9% 37.5%
3190607 6169.1.1.59 ↗ extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › PLAC8 0.52 46.0 3.88e-01 100.0% 57.6%