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NC_023502.1__YP_009003180.1__CC53_gp023__00023
Bact-VirNC_023502.1__YP_009003180.1__CC53_gp023__00023
Identity
- Accession:
- NC_023502 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-72
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.91 | 62.0 | 7.02e-01 | 100.0% | 93.5% |
| 3tqvA01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.57 | 48.0 | 3.87e-01 | 100.0% | 68.4% |
| 4ivkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 45.0 | 2.83e-01 | 100.0% | 72.3% |
| 1itpA00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.52 | 44.0 | 4.19e-01 | 100.0% | 85.7% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.52 | 42.0 | 3.15e-01 | 95.1% | 45.7% |
| 1xhsA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.51 | 45.0 | 3.72e-01 | 100.0% | 77.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5009 | 4076.3.1.2 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF | 0.91 | 62.0 | 6.84e-01 | 100.0% | 87.8% |
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.74 | 49.0 | 5.42e-01 | 100.0% | 93.3% |
| 5035097 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.71 | 47.0 | 5.24e-01 | 98.4% | 95.6% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.69 | 46.0 | 5.01e-01 | 96.7% | 93.3% |
| 4956777 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.63 | 44.0 | 4.11e-01 | 75.4% | 58.7% |
| 3589192 | 101.1.1.68 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 | 0.61 | 42.0 | 3.93e-01 | 73.8% | 76.2% |
| 4967853 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.60 | 29.0 | 3.11e-01 | 91.8% | 45.5% |
| 3719051 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.59 | 43.0 | 2.83e-01 | 80.3% | 21.0% |
| 4241274 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 46.0 | 2.84e-01 | 100.0% | 34.4% |
| 4238039 | 101.1.1.68 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 | 0.55 | 37.0 | 3.81e-01 | 72.1% | 100.0% |
| None | — | 0.55 | 40.0 | 2.92e-01 | 77.0% | 62.5% | |
| 4798770 | 5097.1.1.3 ↗ | beta sandwiches › Middle beta-sandwich domain in anthrax protective antigen › Middle beta-sandwich domain in anthrax protective antigen › Middle beta-sandwich domain in anthrax protective antigen › Binary_toxB_2, Binary_toxB_3 | 0.53 | 38.0 | 2.84e-01 | 80.3% | 77.7% |
| None | — | 0.52 | 38.0 | 2.80e-01 | 78.7% | 59.4% | |
| 5047366 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.52 | 38.0 | 2.75e-01 | 82.0% | 54.3% |
| None | — | 0.51 | 37.0 | 2.74e-01 | 78.7% | 59.4% | |
| 3642597 | 109.4.1.498 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4487 | 0.51 | 37.0 | 2.30e-01 | 85.2% | 30.2% |
| 3651717 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.51 | 37.0 | 2.51e-01 | 82.0% | 36.4% |