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NC_023502.1__YP_009003231.1__CC53_gp074__00074

Bact-Vir

NC_023502.1__YP_009003231.1__CC53_gp074__00074

Identity

Accession:
NC_023502 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-78
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.86 59.0 6.80e-01 100.0% 94.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 55.0 6.12e-01 100.0% 83.9%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 50.0 4.81e-01 100.0% 56.2%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 52.0 5.18e-01 100.0% 64.4%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 53.0 5.70e-01 100.0% 80.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 51.0 5.37e-01 100.0% 73.0%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 56.0 5.31e-01 100.0% 67.5%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 58.0 6.18e-01 100.0% 93.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 49.0 4.35e-01 100.0% 47.0%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 54.0 4.82e-01 100.0% 55.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 57.0 5.60e-01 100.0% 76.0%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.67e-01 98.6% 80.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 54.0 5.46e-01 100.0% 79.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 5.93e-01 100.0% 94.9%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 5.36e-01 100.0% 95.7%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 5.72e-01 100.0% 88.9%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 49.0 4.58e-01 100.0% 57.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 55.0 5.77e-01 100.0% 90.3%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 55.0 5.88e-01 100.0% 93.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 55.0 5.96e-01 100.0% 98.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 57.0 5.84e-01 100.0% 89.4%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 52.0 5.72e-01 100.0% 98.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 55.0 5.50e-01 100.0% 81.4%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.01e-01 100.0% 62.4%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 5.41e-01 100.0% 90.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 56.0 5.74e-01 100.0% 91.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 54.0 5.67e-01 100.0% 92.2%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 52.0 5.60e-01 100.0% 96.6%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 50.0 4.86e-01 100.0% 71.1%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 51.0 5.01e-01 100.0% 74.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 5.32e-01 100.0% 81.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.46e-01 100.0% 91.0%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 5.27e-01 95.7% 100.0%
2eyzA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 3.96e-01 90.0% 54.9%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 50.0 5.20e-01 94.3% 95.5%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 50.0 5.16e-01 100.0% 98.4%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 36.0 2.88e-01 90.0% 28.7%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 4.91e-01 100.0% 85.1%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.97e-01 100.0% 80.7%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 43.0 3.33e-01 100.0% 33.5%
1ywmA01 2.60.500.10 Mainly Beta › Sandwich › Surface Active Protein fold › Surface Active Protein domain 0.59 47.0 4.25e-01 88.6% 94.9%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.32e-01 100.0% 72.1%
6ci7A01 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 39.0 3.33e-01 71.4% 92.6%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.25e-01 97.1% 66.7%
3ntkB01 2.40.50.790 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.93e-01 78.6% 98.8%
2fgtA03 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.54 41.0 3.46e-01 87.1% 85.2%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.52e-01 100.0% 95.1%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.52 42.0 3.16e-01 90.0% 77.4%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 33.0 3.57e-01 81.4% 92.2%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3407827 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 52.0 4.81e-01 100.0% 52.9%
3955235 4.1.1.183 beta barrels › SH3 › SH3 › SH3 › DUF4926 0.82 61.0 5.86e-01 100.0% 68.8%
3573262 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.78 58.0 5.32e-01 100.0% 61.1%
3924760 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 60.0 5.45e-01 100.0% 63.3%
3401559 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 59.0 6.09e-01 100.0% 86.2%
3241067 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 54.0 4.56e-01 100.0% 46.4%
3784140 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 54.0 6.02e-01 100.0% 92.7%
3849311 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 58.0 6.25e-01 100.0% 93.3%
3323529 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.76 57.0 5.97e-01 100.0% 86.2%
3621642 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 56.0 5.34e-01 100.0% 68.8%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 56.0 5.96e-01 100.0% 91.7%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 61.0 6.29e-01 100.0% 93.8%
3600486 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 55.0 4.86e-01 100.0% 55.0%
3879164 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.74 57.0 5.58e-01 100.0% 76.0%
3624525 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.74 54.0 3.94e-01 100.0% 30.0%
3480491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.47e-01 100.0% 74.7%
3788021 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 56.0 5.53e-01 100.0% 76.0%
3633434 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 55.0 5.58e-01 100.0% 80.0%
4028731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.78e-01 100.0% 86.2%
3526953 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 56.0 5.89e-01 100.0% 90.5%
3583485 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.73 54.0 4.64e-01 100.0% 51.4%
3234274 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 55.0 5.56e-01 100.0% 80.0%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.46e-01 100.0% 78.6%
3897602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.02e-01 100.0% 60.0%
3480351 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.56e-01 100.0% 77.3%
3275623 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 55.0 5.15e-01 100.0% 65.9%
3999508 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 5.83e-01 100.0% 84.3%
3512419 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 56.0 5.28e-01 100.0% 68.2%
3920103 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 55.0 5.02e-01 100.0% 62.2%
3999507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 59.0 5.90e-01 100.0% 87.1%
3842062 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.72 56.0 4.88e-01 100.0% 57.0%
3999846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 57.0 5.57e-01 100.0% 78.7%
3846212 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 54.0 5.19e-01 100.0% 70.0%
3890893 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 53.0 5.92e-01 97.1% 100.0%
3581631 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 56.0 5.85e-01 100.0% 90.8%
4134876 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.72 54.0 4.05e-01 100.0% 33.9%
3554994 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 54.0 4.96e-01 100.0% 62.9%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 57.0 5.55e-01 100.0% 78.7%
3210707 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 56.0 6.04e-01 100.0% 98.3%
3561094 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 58.0 5.67e-01 100.0% 81.3%
3290564 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.71 61.0 5.60e-01 100.0% 72.2%
3908017 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.71 56.0 5.32e-01 100.0% 72.5%
4218488 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 56.0 5.35e-01 100.0% 73.8%
3240192 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 53.0 5.23e-01 100.0% 74.7%
3566631 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 56.0 5.34e-01 100.0% 73.8%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 58.0 5.65e-01 100.0% 81.3%
3710561 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 57.0 5.85e-01 100.0% 93.8%
3936225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.43e-01 100.0% 81.4%
3619598 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 52.0 4.92e-01 98.6% 64.7%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 56.0 5.09e-01 100.0% 65.6%
3782313 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 57.0 5.60e-01 100.0% 81.3%
3415045 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 52.0 5.24e-01 100.0% 78.6%
3607307 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 56.0 5.63e-01 100.0% 87.1%
3227565 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 53.0 5.69e-01 97.1% 95.0%
3742291 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 53.0 5.49e-01 100.0% 87.7%
157323 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.74e-01 100.0% 91.2%
1263753 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 52.0 5.54e-01 100.0% 93.3%
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 54.0 5.35e-01 100.0% 78.7%
3507664 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 52.0 5.55e-01 100.0% 93.3%
3918340 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 53.0 5.33e-01 100.0% 81.4%
3786978 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 59.0 6.02e-01 100.0% 95.7%
3697262 601.1.1.120 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › SH3_9 0.68 55.0 3.94e-01 100.0% 31.3%
3171604 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 58.0 5.74e-01 100.0% 86.7%
3203654 601.16.1.12 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.68 54.0 3.90e-01 100.0% 30.5%
4038705 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.68 56.0 5.77e-01 100.0% 95.4%
4019491 601.16.1.7 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_9 0.68 54.0 3.86e-01 100.0% 29.8%
3995675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 51.0 5.45e-01 100.0% 95.0%
3180487 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 54.0 3.90e-01 100.0% 31.3%
4036369 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.67 54.0 4.72e-01 87.1% 82.9%
4127826 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 55.0 5.68e-01 100.0% 95.4%
149928 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 49.0 4.31e-01 100.0% 52.8%
5000593 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 54.0 5.34e-01 100.0% 84.0%
4950222 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.66 60.0 5.11e-01 100.0% 73.6%
3475429 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.56e-01 100.0% 92.9%
3170649 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 59.0 5.54e-01 100.0% 84.7%
3594811 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.53e-01 100.0% 98.5%
4282230 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.65 51.0 4.45e-01 84.3% 78.1%
4458510 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.65 52.0 4.42e-01 87.1% 75.7%
4951199 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 52.0 5.15e-01 100.0% 82.7%
3482860 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 55.0 5.08e-01 95.7% 76.7%
4963580 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 54.0 5.18e-01 100.0% 82.5%
3887433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 57.0 4.85e-01 100.0% 97.4%
515 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 56.0 5.10e-01 100.0% 98.9%
3232165 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 56.0 5.17e-01 100.0% 98.9%
3675653 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.63 52.0 5.10e-01 100.0% 82.7%
4957418 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 50.0 4.95e-01 100.0% 84.0%
5078626 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 51.0 5.02e-01 100.0% 86.5%
3707345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 56.0 5.16e-01 100.0% 92.2%
4939495 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 51.0 5.04e-01 100.0% 87.7%
3498157 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 55.0 4.79e-01 100.0% 81.9%
3592075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.75e-01 100.0% 75.3%
1144711 3815.1.1.1 beta sandwiches › C protein alpha-antigen beta-sandwich domain › C protein alpha-antigen beta-sandwich domain › C protein alpha-antigen beta-sandwich domain › AlphaC_N 0.59 47.0 4.17e-01 88.6% 89.4%
3201878 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 53.0 4.13e-01 100.0% 50.0%
5040646 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.21e-01 77.1% 96.7%
3223257 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.50 40.0 3.47e-01 92.9% 88.3%
D2 high residues 218-350
PDB