←Back to structures
NC_023502.1__YP_009003267.1__CC53_gp110__00110
Bact-VirNC_023502.1__YP_009003267.1__CC53_gp110__00110
Identity
- Accession:
- NC_023502 ↗
- Kingdom:
- phage
Quality
88.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.80 | 54.0 | 4.84e-01 | 89.3% | 51.3% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 50.0 | 4.34e-01 | 100.0% | 58.3% |
| 6gszA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 52.0 | 4.32e-01 | 100.0% | 60.8% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.60 | 48.0 | 4.42e-01 | 100.0% | 89.0% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 50.0 | 4.28e-01 | 100.0% | 90.7% |
| 5xbfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 49.0 | 4.38e-01 | 100.0% | 98.9% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 48.0 | 4.34e-01 | 96.4% | 94.9% |
| 3uv0B00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 45.0 | 3.76e-01 | 87.5% | 99.0% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.57 | 49.0 | 3.78e-01 | 100.0% | 43.6% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 47.0 | 3.59e-01 | 100.0% | 70.9% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.56 | 42.0 | 3.13e-01 | 89.3% | 37.5% |
| 1ryp100 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 44.0 | 3.15e-01 | 100.0% | 89.2% |
| 2pw9C02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 44.0 | 4.40e-01 | 100.0% | 93.1% |
| 5z06B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 48.0 | 4.12e-01 | 100.0% | 64.1% |
| 3v67A01 | 3.30.450.210 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain | 0.55 | 43.0 | 3.47e-01 | 89.3% | 83.5% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.54 | 46.0 | 4.01e-01 | 100.0% | 98.9% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 42.0 | 3.62e-01 | 89.3% | 53.1% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.54 | 42.0 | 3.46e-01 | 89.3% | 45.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 46.0 | 3.35e-01 | 98.2% | 92.8% |
| 6i6rB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.78e-01 | 100.0% | 58.6% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.53 | 45.0 | 3.76e-01 | 100.0% | 58.5% |
| 4ii2A04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 42.0 | 2.83e-01 | 89.3% | 69.9% |
| 2yweA05 | 3.30.70.2570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation factor 4, C-terminal domain | 0.52 | 43.0 | 4.17e-01 | 100.0% | 85.3% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 39.0 | 3.14e-01 | 92.9% | 95.6% |
| 2yrbA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 43.0 | 3.33e-01 | 100.0% | 51.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018703 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.77 | 68.0 | 5.82e-01 | 100.0% | 66.7% |
| 4977431 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.74 | 60.0 | 5.70e-01 | 89.3% | 80.0% |
| 3404637 | 2498.2.1.3 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › NAGLU_N | 0.72 | 50.0 | 4.20e-01 | 71.4% | 77.9% |
| 5075866 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 56.0 | 5.09e-01 | 96.4% | 100.0% |
| 4180524 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.67 | 57.0 | 3.57e-01 | 98.2% | 50.0% |
| 5003527 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.63 | 55.0 | 4.07e-01 | 100.0% | 36.7% |
| 3838009 | 1118.1.1.2 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_2 | 0.62 | 52.0 | 4.45e-01 | 100.0% | 57.9% |
| 3706728 | 221.7.1.0 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 | 0.62 | 53.0 | 4.27e-01 | 100.0% | 62.6% |
| 4930766 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.60 | 51.0 | 3.95e-01 | 100.0% | 45.2% |
| 5059050 | 221.10.1.0 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain | 0.60 | 48.0 | 4.67e-01 | 98.2% | 87.7% |
| 5001166 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.60 | 42.0 | 3.32e-01 | 89.3% | 32.6% |
| 4954188 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.59 | 51.0 | 3.83e-01 | 100.0% | 53.0% |
| 4231372 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.58 | 46.0 | 4.35e-01 | 89.3% | 97.1% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.58 | 42.0 | 4.18e-01 | 87.5% | 75.0% |
| 3386661 | 1118.1.1.2 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_2 | 0.56 | 46.0 | 3.96e-01 | 100.0% | 55.0% |
| 3509065 | 221.7.1.3 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL | 0.56 | 49.0 | 4.30e-01 | 100.0% | 67.1% |
| 3594014 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.56 | 46.0 | 3.10e-01 | 96.4% | 73.8% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.56 | 44.0 | 4.05e-01 | 89.3% | 94.7% |
| 5009755 | 4176.1.1.2 ↗ | a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N | 0.56 | 45.0 | 3.09e-01 | 91.1% | 66.5% |
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.55 | 44.0 | 4.28e-01 | 100.0% | 85.5% |
| 3275962 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 46.0 | 3.78e-01 | 100.0% | 64.3% |
| 3611249 | 230.4.1.0 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like | 0.54 | 47.0 | 3.31e-01 | 100.0% | 78.9% |
| 3442219 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.54 | 42.0 | 2.53e-01 | 83.9% | 87.3% |
| 3618241 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 42.0 | 3.54e-01 | 89.3% | 74.3% |
| 3512178 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.54 | 42.0 | 2.96e-01 | 100.0% | 84.8% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.53 | 43.0 | 4.07e-01 | 100.0% | 90.7% |
| 3706132 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 43.0 | 3.89e-01 | 98.2% | 97.6% |
| 4967778 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.52 | 40.0 | 3.34e-01 | 89.3% | 50.9% |
| 1309233 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.52 | 42.0 | 3.27e-01 | 100.0% | 38.5% |
| 3180836 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.51 | 45.0 | 2.80e-01 | 100.0% | 34.9% |
| 5051984 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 38.0 | 3.04e-01 | 80.4% | 78.3% |
| 4018289 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 40.0 | 3.20e-01 | 98.2% | 94.5% |
| 3546356 | 221.1.1.113 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 | 0.50 | 40.0 | 3.26e-01 | 100.0% | 83.1% |