←Back to structures

NC_023502.1__YP_009003301.1__CC53_gp144__00144

Bact-Vir

Identity

Accession:: NC_023502 ↗
Kingdom:: phage

Quality

71.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_vB_RleS_L338C

TaxID: 1414737

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kvtA00	3.30.730.30	Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein	0.65	41.0	3.85e-01	87.9%	52.1%
2b9dA01	3.30.160.330	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.57	33.0	3.66e-01	87.9%	79.5%
1h10A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.56	36.0	2.91e-01	87.9%	32.5%
3e0jB00	3.90.1030.20	Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain	0.53	36.0	2.78e-01	100.0%	28.7%
5ja1B00	3.90.820.10	Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	0.53	39.0	3.80e-01	87.9%	69.7%
2wliA02	2.60.40.1400	Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1	0.53	44.0	3.33e-01	100.0%	42.2%
3kk7A01	3.30.420.400	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.53	43.0	3.69e-01	100.0%	70.6%
1b69A00	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.52	31.0	3.03e-01	96.6%	46.4%
1hq6B00	3.50.20.10	Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B	0.51	45.0	2.99e-01	100.0%	32.0%
1s3rA04	2.60.40.1430	Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4	0.51	39.0	3.24e-01	98.3%	45.0%
3h96C00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.50	42.0	3.23e-01	94.8%	46.4%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3250040	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.64	43.0	3.41e-01	100.0%	32.8%
3411686	3136.1.1.1 ↗	extended segments › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Nup98_GLEBS	0.62	36.0	3.62e-01	81.0%	55.0%
3480564	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.59	35.0	2.60e-01	86.2%	24.3%
3798608	2492.1.1.4 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like	0.54	46.0	2.91e-01	100.0%	20.0%
4985674	862.1.1.5 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol	0.54	44.0	2.96e-01	100.0%	45.9%
1886098	4076.2.1.1 ↗	a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH	0.53	39.0	3.80e-01	87.9%	69.7%
3458124	10.12.1.17 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N	0.52	40.0	2.54e-01	87.9%	19.7%
4180654	2.6.1.1 ↗	beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase	0.52	44.0	3.37e-01	100.0%	90.3%
4021124	5.1.5.88 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N	0.51	38.0	2.23e-01	82.8%	9.8%
3483323	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.50	43.0	2.85e-01	100.0%	30.2%