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NC_023502.1__YP_009003312.1__CC53_gp155__00155

Bact-Vir

NC_023502.1__YP_009003312.1__CC53_gp155__00155

Identity

Accession:
NC_023502 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_vB_RleS_L338C

TaxID: 1414737

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-59
PDB
D2 high residues 66-154
PDB
Domain cluster: rep: NC_048046.1__YP_009809580.1__HOU00_gp175__00411__D2-64
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.53 38.0 3.80e-01 77.5% 73.0%
1q25A02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.53 40.0 3.40e-01 83.1% 96.2%
2kctA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.66e-01 79.8% 73.6%
2v5oA05 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 40.0 3.43e-01 84.3% 97.1%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.50 42.0 3.66e-01 95.5% 80.1%
4l3aA03 2.60.40.3890 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 3.38e-01 76.4% 92.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
373062 2.1.1.74 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_SSB 0.55 38.0 3.80e-01 77.5% 70.8%
3509551 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 33.0 3.44e-01 70.8% 69.4%
4114579 2.1.1.24 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.50 32.0 3.31e-01 76.4% 67.1%
3941388 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 36.0 3.09e-01 75.3% 63.6%
2439645 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 37.0 3.29e-01 78.7% 76.9%