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NC_023502.1__YP_009003323.1__CC53_gp166__00166

Bact-Vir

NC_023502.1__YP_009003323.1__CC53_gp166__00166

Identity

Accession:
NC_023502 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_vB_RleS_L338C

TaxID: 1414737

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-105
PDB
Domain cluster: rep: MH700630.1__AXP07700.1__SmphiM6_8__00008__D3-97
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vveA01 2.60.120.770 Mainly Beta › Sandwich › Jelly Rolls › 0.71 49.0 5.20e-01 92.3% 80.6%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.69 51.0 4.67e-01 76.9% 86.6%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.68 48.0 4.79e-01 74.0% 82.6%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.66 56.0 5.15e-01 100.0% 71.4%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.66 48.0 4.61e-01 76.0% 73.5%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 48.0 4.36e-01 78.8% 88.0%
1pmiA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 46.0 4.43e-01 100.0% 66.4%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.63 46.0 4.28e-01 76.0% 83.2%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.63 49.0 4.76e-01 96.2% 75.2%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 44.0 4.50e-01 99.0% 73.8%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 44.0 4.69e-01 99.0% 85.2%
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 42.0 4.26e-01 99.0% 70.6%
2luwA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.67e-01 96.2% 82.2%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.63e-01 95.2% 79.8%
3eo6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 42.0 4.23e-01 99.0% 69.8%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 45.0 4.63e-01 78.8% 84.2%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 40.0 4.26e-01 99.0% 79.8%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 48.0 3.99e-01 93.3% 51.1%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.58 41.0 4.12e-01 92.3% 72.4%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.64e-01 89.4% 81.9%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 40.0 3.90e-01 99.0% 65.8%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 42.0 4.21e-01 99.0% 74.3%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 4.16e-01 99.0% 75.2%
1g4mA01 2.60.40.840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.53e-01 76.0% 84.8%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 3.95e-01 98.1% 65.0%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 39.0 4.27e-01 97.1% 92.4%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 4.47e-01 92.3% 81.8%
1e5bA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 4.56e-01 100.0% 94.3%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 50.0 4.61e-01 98.1% 93.9%
5b71E00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 41.0 4.32e-01 100.0% 86.0%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 46.0 4.75e-01 99.0% 96.9%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.51e-01 99.0% 50.3%
4d7yA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 4.39e-01 92.3% 81.7%
3ht1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 39.0 3.58e-01 99.0% 54.9%
7uwjC02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.55 35.0 3.64e-01 91.3% 69.1%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 48.0 4.81e-01 100.0% 95.3%
7bysA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 4.43e-01 93.3% 92.6%
3gldA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.54 48.0 4.47e-01 100.0% 82.4%
3rykA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 45.0 3.79e-01 90.4% 53.1%
1rj8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 4.17e-01 92.3% 82.1%
4knuA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 46.0 3.99e-01 92.3% 81.8%
5hbaA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 4.21e-01 92.3% 80.5%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.54e-01 100.0% 92.0%
2e4tA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 48.0 4.57e-01 100.0% 92.6%
2oyzA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 4.35e-01 96.2% 92.6%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 4.11e-01 100.0% 83.8%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 3.59e-01 99.0% 53.7%
5h4cB00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 4.12e-01 92.3% 82.2%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 4.30e-01 96.2% 86.7%
4b29A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.61e-01 92.3% 96.9%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 37.0 3.71e-01 74.0% 75.2%
2pn5A07 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.59e-01 76.0% 70.8%
2a74D01 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.52 42.0 3.95e-01 97.1% 71.1%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 39.0 3.86e-01 100.0% 76.6%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.05e-01 100.0% 84.6%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.51 42.0 4.26e-01 96.2% 91.2%
2vzsA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 4.01e-01 100.0% 86.1%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4935032 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 53.0 5.27e-01 76.9% 80.0%
4978088 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 50.0 4.91e-01 74.0% 74.8%
3909461 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.70 42.0 4.54e-01 93.3% 70.0%
3291345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 44.0 4.38e-01 93.3% 63.6%
3716417 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 42.0 4.50e-01 97.1% 73.3%
185509 10.26.1.2 ↗ beta sandwiches › jelly-roll › Histone H3 binding protein ORF158L › Histone H3 binding protein ORF158L › ORF158L-like 0.66 56.0 5.15e-01 100.0% 71.4%
4284515 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.66 46.0 4.73e-01 99.0% 75.0%
3932306 10.32.1.223 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ELAPOR1 0.65 47.0 3.51e-01 76.9% 54.3%
4982229 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 46.0 4.66e-01 76.0% 76.2%
3395027 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 46.0 4.12e-01 76.0% 68.7%
3899029 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.63 46.0 4.14e-01 76.0% 76.6%
4574158 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.63 41.0 3.68e-01 93.3% 48.6%
3938640 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.62 45.0 4.47e-01 76.0% 77.3%
4942975 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 49.0 4.74e-01 92.3% 77.4%
3593293 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.41e-01 89.4% 81.1%
4151774 10.12.1.28 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.60 44.0 4.13e-01 99.0% 63.2%
5016526 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 50.0 4.03e-01 91.3% 63.9%
3599632 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 3.86e-01 100.0% 57.6%
4266103 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.60 39.0 3.67e-01 95.2% 53.1%
4170992 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.59 48.0 4.80e-01 100.0% 83.6%
3753737 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.59 47.0 4.24e-01 86.5% 82.6%
3598749 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 52.0 4.67e-01 97.1% 87.1%
3708492 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 41.0 4.17e-01 76.0% 78.1%
4011908 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.56 48.0 3.98e-01 93.3% 62.7%
4938045 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 4.12e-01 100.0% 78.0%
3507788 11.1.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta 0.56 49.0 4.32e-01 100.0% 87.4%
4043444 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 44.0 4.33e-01 92.3% 79.1%
5058290 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 4.18e-01 99.0% 86.4%
4970245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.83e-01 92.3% 67.8%
4944012 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 49.0 4.88e-01 100.0% 94.5%
3612787 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.54 44.0 3.62e-01 100.0% 48.6%
1722715 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 4.00e-01 100.0% 79.0%
3929546 11.1.1.378 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.54 45.0 3.99e-01 92.3% 69.0%
3824643 10.12.1.21 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R 0.54 43.0 3.45e-01 95.2% 43.3%
1108811 11.15.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.53 40.0 4.01e-01 100.0% 77.1%
3093592 12.1.1.21 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_66 0.53 46.0 4.44e-01 99.0% 95.9%
5079939 11.1.1.138 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.53 43.0 4.30e-01 100.0% 85.7%
4666307 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 43.0 3.14e-01 100.0% 33.7%
3500821 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 43.0 3.96e-01 92.3% 68.9%
3922317 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 46.0 3.86e-01 100.0% 78.4%
4016615 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.52 42.0 3.39e-01 96.2% 46.7%
4890244 11.1.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M 0.51 42.0 4.15e-01 99.0% 83.3%
3220762 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 45.0 4.28e-01 100.0% 82.4%
5057653 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 2.99e-01 100.0% 34.8%