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NC_023549.1__YP_009004248.1__CN1A_36__00036

Bact-Vir

NC_023549.1__YP_009004248.1__CN1A_36__00036

Identity

Accession:
NC_023549 ↗
Kingdom:
phage

Quality

61.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cinunavirus› Clavibacter_phage_CN1A

TaxID: 1406793

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-130
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02557.23 best VanY 55.7 6.30e-15 85.9% 95.5%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vo9A01 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.86 73.0 7.24e-01 88.3% 94.7%
4mphA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.84 80.0 6.95e-01 100.0% 86.2%
4muqA02 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.82 76.0 7.27e-01 98.4% 98.6%
1r44A00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.81 72.0 6.01e-01 93.0% 92.6%
5hnmC00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.81 77.0 6.73e-01 100.0% 87.6%
1lbuA02 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.77 58.0 5.87e-01 96.1% 78.3%
4d0yA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.74 69.0 6.06e-01 100.0% 82.1%
1tzpB00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.69 64.0 5.15e-01 100.0% 76.7%
1pc3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 45.0 4.43e-01 83.6% 94.3%
3i3vB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 43.0 3.98e-01 79.7% 95.3%
2uvgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 43.0 3.85e-01 79.7% 85.3%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 30.0 2.94e-01 100.0% 46.5%
4n13A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 40.0 4.23e-01 78.9% 96.6%
3vaxA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 37.0 4.23e-01 100.0% 96.8%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 48.0 3.48e-01 100.0% 80.4%
3mc2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 40.0 3.70e-01 82.0% 85.1%
2gh9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 39.0 3.49e-01 78.1% 84.9%
2xxpA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 29.0 3.20e-01 83.6% 68.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1297179 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.83 79.0 6.49e-01 100.0% 77.5%
1103093 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.83 78.0 6.81e-01 100.0% 84.8%
3961855 307.1.1.2 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.81 72.0 6.08e-01 93.0% 91.0%
3589629 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.81 77.0 6.49e-01 100.0% 85.4%
228616 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.81 76.0 5.97e-01 100.0% 62.5%
3256406 307.1.1.2 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.81 75.0 6.23e-01 98.4% 84.3%
3589476 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.80 75.0 5.96e-01 100.0% 64.6%
5588 307.1.1.5 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 0.77 58.0 5.85e-01 96.1% 77.7%
1293086 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.75 71.0 6.17e-01 100.0% 81.0%
4861717 307.1.1.11 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › PF31190 0.73 61.0 6.19e-01 87.5% 88.8%
4600927 307.1.1.0 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase 0.69 64.0 5.04e-01 100.0% 71.3%
4992028 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.64 31.0 3.69e-01 70.3% 67.9%
3166153 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.63 57.0 5.75e-01 100.0% 94.6%
4938175 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.51 46.0 4.06e-01 100.0% 90.5%
D2 medium residues 156-284
PDB