←Back to structures

NC_023556.1__YP_009004728.1__CH29_gp27__00027

Bact-Vir

NC_023556.1__YP_009004728.1__CH29_gp27__00027

Identity

Accession:
NC_023556 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Jwalphavirus› Achromobacter_phage_JWAlpha

TaxID: 1416009

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 53-115
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 40.0 3.94e-01 82.5% 52.2%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 37.0 3.58e-01 81.0% 47.9%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 39.0 3.75e-01 84.1% 50.7%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 35.0 3.18e-01 85.7% 36.0%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 39.0 4.02e-01 84.1% 63.3%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 38.0 3.80e-01 87.3% 58.2%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 36.0 4.04e-01 76.2% 76.6%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 37.0 3.74e-01 85.7% 57.6%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 37.0 4.26e-01 81.0% 85.1%
2x4kA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.59 41.0 4.17e-01 82.5% 75.8%
3onqA01 1.20.5.5100 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 31.0 3.65e-01 93.7% 76.2%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.44e-01 84.1% 95.5%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 36.0 3.53e-01 82.5% 58.2%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 41.0 3.73e-01 87.3% 57.6%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 41.0 3.06e-01 90.5% 56.7%
1qy9A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 42.0 3.26e-01 93.7% 64.4%
1wjnA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 41.0 3.56e-01 100.0% 54.6%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.85e-01 81.0% 96.8%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.86e-01 88.9% 93.1%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.38e-01 84.1% 67.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3956747 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 39.0 3.95e-01 85.7% 56.9%
166742 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.64 39.0 3.97e-01 84.1% 61.3%
140568 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.64 39.0 3.83e-01 84.1% 55.9%
3282671 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.62 38.0 3.67e-01 87.3% 52.1%
4929678 315.1.1.2 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.61 45.0 4.61e-01 82.5% 83.3%
3945480 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.58 36.0 3.47e-01 85.7% 52.0%
4954538 3697.1.1.0 ↗ alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain 0.58 38.0 4.32e-01 81.0% 95.6%
3339142 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.57 46.0 3.70e-01 95.2% 58.6%
5002775 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.57 34.0 4.07e-01 84.1% 95.0%
3190182 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.57 44.0 3.50e-01 93.7% 58.9%
314012 4254.1.1.1 ↗ alpha arrays › YoaC-like › YoaC-like › YoaC-like › DUF1889 0.56 45.0 3.88e-01 93.7% 66.7%
3215991 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 39.0 3.90e-01 77.8% 70.8%
4878063 2003.1.10.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › PreAtp-grasp 0.55 41.0 3.36e-01 98.4% 41.5%
3988657 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.55 34.0 3.39e-01 85.7% 58.5%
4034513 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.51 35.0 3.57e-01 81.0% 73.3%
3596050 3697.1.1.0 ↗ alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain 0.51 42.0 3.84e-01 92.1% 81.2%
4966803 101.1.2.948 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27297 0.51 38.0 3.49e-01 85.7% 71.1%
3269776 2007.2.3.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK 0.50 42.0 3.10e-01 100.0% 48.5%
5064933 2004.1.1.141 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N 0.50 41.0 2.91e-01 92.1% 27.6%