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NC_023556.1__YP_009004730.1__CH29_gp29__00029

Bact-Vir

NC_023556.1__YP_009004730.1__CH29_gp29__00029

Identity

Accession:
NC_023556 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Jwalphavirus› Achromobacter_phage_JWAlpha

TaxID: 1416009

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: rep: KM879221.2__AIU44271.1__RG2014_017__00017__D2-73
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 48.0 4.85e-01 97.6% 66.7%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.73 51.0 4.32e-01 100.0% 44.3%
2c1lA02 2.40.330.30 Mainly Beta › Beta Barrel › At1g16640 B3 domain › 0.71 48.0 3.82e-01 70.6% 77.6%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.69 36.0 3.23e-01 76.5% 34.1%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.69 37.0 3.40e-01 76.5% 40.9%
3mfxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 35.0 3.17e-01 76.5% 36.0%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 36.0 3.24e-01 77.6% 36.1%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 36.0 3.30e-01 76.5% 38.6%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 36.0 3.23e-01 76.5% 37.0%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 36.0 3.11e-01 76.5% 33.1%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 37.0 3.47e-01 76.5% 44.2%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 37.0 3.34e-01 77.6% 40.2%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 44.0 3.75e-01 91.8% 43.2%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 34.0 3.16e-01 76.5% 40.4%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 37.0 3.36e-01 77.6% 41.9%
3ewkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 34.0 3.25e-01 76.5% 42.7%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 36.0 3.21e-01 77.6% 39.2%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 35.0 3.23e-01 76.5% 42.1%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 36.0 3.17e-01 77.6% 38.5%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.61 33.0 4.25e-01 77.6% 97.8%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 42.0 4.01e-01 74.1% 100.0%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.58 43.0 3.67e-01 77.6% 53.3%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 32.0 2.97e-01 77.6% 40.4%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 44.0 3.68e-01 84.7% 83.1%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 32.0 2.95e-01 75.3% 42.7%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 33.0 2.97e-01 77.6% 40.7%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.73e-01 81.2% 80.8%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 41.0 3.77e-01 80.0% 87.3%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 39.0 3.74e-01 74.1% 96.0%
1fvzA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 41.0 2.94e-01 100.0% 25.7%
2vtfA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 40.0 3.29e-01 82.4% 97.2%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 40.0 4.11e-01 87.1% 82.7%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 45.0 3.60e-01 97.6% 66.5%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 42.0 3.78e-01 91.8% 95.3%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.80e-01 81.2% 73.7%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.79e-01 87.1% 92.6%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.05e-01 82.4% 43.8%
3i1iB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 44.0 2.93e-01 100.0% 38.8%
3oo2A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.50 39.0 3.27e-01 83.5% 57.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3254148 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.74 39.0 3.70e-01 76.5% 44.0%
4980684 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.74 38.0 2.33e-01 76.5% 9.0%
5017897 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.73 38.0 3.06e-01 75.3% 28.7%
5019276 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.71 39.0 2.71e-01 77.6% 17.6%
4979994 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.71 38.0 3.25e-01 76.5% 33.3%
4939729 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.71 39.0 3.37e-01 77.6% 36.8%
4980669 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 38.0 3.26e-01 76.5% 34.6%
4551342 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 38.0 3.89e-01 76.5% 54.1%
5018462 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.70 36.0 2.53e-01 76.5% 16.5%
5045028 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.69 37.0 2.58e-01 76.5% 16.9%
5047125 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.69 36.0 2.54e-01 76.5% 16.5%
5047295 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.69 37.0 3.35e-01 76.5% 40.0%
4957160 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.69 36.0 3.01e-01 77.6% 28.7%
5044348 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.69 38.0 3.45e-01 77.6% 40.9%
4959633 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.68 38.0 2.67e-01 77.6% 18.0%
4963860 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.68 36.0 3.24e-01 76.5% 37.4%
5018818 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.67 38.0 2.67e-01 76.5% 18.8%
5068526 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 37.0 3.50e-01 77.6% 46.0%
3647962 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.67 49.0 4.12e-01 100.0% 45.5%
3967615 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.67 36.0 3.15e-01 76.5% 35.2%
3780897 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.67 35.0 2.46e-01 74.1% 16.8%
3290405 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.67 36.0 3.10e-01 77.6% 34.6%
3967163 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.67 36.0 3.10e-01 76.5% 33.8%
3195099 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.66 38.0 3.25e-01 78.8% 35.8%
3972571 223.1.1.111 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, PAS_9 0.66 37.0 2.55e-01 77.6% 16.7%
5006334 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.66 36.0 3.07e-01 76.5% 32.6%
4930499 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.66 37.0 2.63e-01 77.6% 19.6%
4957920 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.65 35.0 3.12e-01 75.3% 38.3%
4999616 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 36.0 2.31e-01 77.6% 11.4%
3968855 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.65 35.0 3.02e-01 77.6% 33.8%
5069527 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.65 35.0 3.22e-01 76.5% 40.0%
4950593 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.65 36.0 3.07e-01 77.6% 33.3%
5049663 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.65 36.0 3.06e-01 77.6% 33.3%
4557742 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.64 34.0 3.09e-01 76.5% 35.8%
4348177 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.64 35.0 2.98e-01 76.5% 32.6%
4950258 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.64 35.0 2.98e-01 76.5% 32.1%
2440125 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.64 37.0 3.31e-01 77.6% 40.2%
5061316 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.64 36.0 3.09e-01 77.6% 35.4%
4969129 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 34.0 3.22e-01 76.5% 41.9%
5068525 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.62 34.0 2.91e-01 76.5% 32.1%
4960088 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.61 33.0 2.99e-01 75.3% 36.7%
3972990 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 35.0 3.11e-01 77.6% 39.2%
5021006 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.60 34.0 2.79e-01 75.3% 31.0%
4957167 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.60 32.0 2.28e-01 75.3% 16.7%
3971533 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 34.0 3.21e-01 77.6% 45.7%
4989239 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.59 33.0 3.04e-01 76.5% 40.9%
4997159 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.58 34.0 2.87e-01 77.6% 33.8%
4252321 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 4.00e-01 77.6% 75.2%
3818311 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.58 53.0 4.24e-01 100.0% 69.4%
3196169 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.58 42.0 3.99e-01 76.5% 95.0%
3707971 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.57 48.0 3.18e-01 91.8% 64.1%
4994921 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.56 42.0 3.25e-01 78.8% 56.8%
4527337 206.1.2.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.55 48.0 3.38e-01 96.5% 53.1%
5045588 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 32.0 2.86e-01 75.3% 40.0%
3262641 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.54 47.0 3.44e-01 96.5% 71.9%
3308868 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 39.0 3.68e-01 78.8% 62.9%
5002153 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 35.0 3.36e-01 100.0% 59.0%
4026829 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 38.0 3.69e-01 80.0% 92.9%
3939857 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 37.0 3.07e-01 77.6% 47.1%
3041218 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 38.0 3.07e-01 92.9% 41.6%
5053533 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 35.0 2.85e-01 94.1% 37.6%