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NC_023563.1__YP_009005734.1__PBI_SUFFOLK_87__00087

Bact-Vir

Identity

Accession:: NC_023563 ↗
Kingdom:: phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pegunavirus› Mycobacterium_phage_Suffolk

TaxID: 1414748

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-136

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k5iA02	2.30.30.90	Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA)	0.69	47.0	4.70e-01	70.5%	91.0%
2p84A02	2.30.30.290	Mainly Beta › Roll › SH3 type barrels. › YopX-like domains	0.64	43.0	4.49e-01	70.5%	87.7%
1qmyA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.58	45.0	3.61e-01	83.3%	47.4%
2wssA01	2.40.30.20	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.56	40.0	3.79e-01	74.4%	74.2%
3o0wA01	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.56	42.0	3.07e-01	83.3%	75.6%
4bi3A01	3.90.1720.80	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) ›	0.56	43.0	4.17e-01	85.9%	75.8%
3isxA02	2.40.30.40	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2	0.54	38.0	3.73e-01	76.9%	100.0%
3i3tA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.53	44.0	3.09e-01	97.4%	63.4%
4r3dA03	2.60.120.1680	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	45.0	3.85e-01	98.7%	87.6%
1bymA00	2.30.30.90	Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA)	0.50	41.0	3.91e-01	96.2%	94.8%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3282690	219.1.1.8 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60	0.60	42.0	3.68e-01	75.6%	47.5%
3292420	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.59	41.0	3.95e-01	73.1%	81.1%
4273414	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.57	42.0	4.37e-01	76.9%	100.0%
4128405	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.57	40.0	4.17e-01	73.1%	100.0%
5050188	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	39.0	3.79e-01	73.1%	98.9%
4281020	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.56	40.0	3.78e-01	75.6%	73.7%
4184958	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.54	42.0	4.17e-01	87.2%	85.9%
4204303	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.53	42.0	4.10e-01	89.7%	83.3%
3178434	219.1.1.3 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH	0.52	43.0	2.93e-01	97.4%	52.6%
3199895	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.52	40.0	3.79e-01	83.3%	76.8%
4854958	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.51	40.0	3.82e-01	87.2%	79.2%
5049343	206.1.3.8 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3	0.51	40.0	3.41e-01	88.5%	64.0%
4526316	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.51	41.0	3.88e-01	91.0%	77.9%
3296592	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.50	34.0	3.68e-01	71.8%	87.7%