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NC_023568.1__YP_009006149.1__CF80_gp075__00075

Bact-Vir

NC_023568.1__YP_009006149.1__CF80_gp075__00075

Identity

Accession:
NC_023568 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_VH7D

TaxID: 1262539

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-70
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 56.0 4.58e-01 95.0% 87.2%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 56.0 4.49e-01 96.7% 81.0%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.65 57.0 4.47e-01 100.0% 57.5%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 54.0 4.02e-01 96.7% 67.3%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 52.0 4.15e-01 93.3% 86.6%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.17e-01 95.0% 91.4%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.10e-01 93.3% 74.2%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.63 52.0 4.07e-01 95.0% 88.9%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 50.0 4.24e-01 95.0% 94.4%
1ia9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 51.0 3.96e-01 100.0% 91.0%
2b39A13 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 48.0 3.80e-01 91.7% 69.1%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 3.78e-01 93.3% 41.5%
3w1eA02 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.60 50.0 3.65e-01 96.7% 83.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 47.0 3.92e-01 88.3% 51.4%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 3.90e-01 95.0% 82.4%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 43.0 3.85e-01 81.7% 56.0%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 46.0 3.62e-01 91.7% 66.4%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 47.0 4.17e-01 90.0% 80.9%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 3.47e-01 91.7% 69.1%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.88e-01 95.0% 77.7%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 49.0 3.11e-01 95.0% 22.8%
5jpnC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 46.0 3.50e-01 91.7% 59.9%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.65e-01 78.3% 90.2%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 50.0 3.81e-01 98.3% 78.0%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.57 48.0 3.84e-01 96.7% 67.2%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 45.0 3.39e-01 91.7% 60.4%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 42.0 3.71e-01 81.7% 57.1%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.56 44.0 3.48e-01 86.7% 66.4%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 48.0 3.02e-01 100.0% 74.8%
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 42.0 3.62e-01 85.0% 69.3%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 3.22e-01 91.7% 55.2%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 46.0 2.92e-01 100.0% 79.8%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 3.50e-01 98.3% 57.5%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.54 40.0 4.12e-01 81.7% 87.5%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 40.0 4.04e-01 90.0% 81.7%
1q6wG00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.25e-01 90.0% 92.6%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.26e-01 90.0% 71.1%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.52 38.0 3.89e-01 78.3% 79.7%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 39.0 2.57e-01 83.3% 17.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 3.29e-01 86.7% 68.7%
1kvzA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.51 40.0 3.54e-01 96.7% 87.9%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 40.0 2.69e-01 93.3% 64.1%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 40.0 3.22e-01 88.3% 78.9%
3b5hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.11e-01 71.7% 75.6%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 57.0 5.55e-01 100.0% 81.5%
3974565 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.68 49.0 4.79e-01 91.7% 70.8%
3231541 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 59.0 3.79e-01 100.0% 30.7%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 51.0 5.02e-01 100.0% 81.5%
3959772 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 50.0 3.62e-01 85.0% 30.9%
3471363 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.63 50.0 3.71e-01 100.0% 31.4%
4030664 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.62 52.0 3.85e-01 100.0% 90.9%
3212666 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.62 41.0 4.56e-01 70.0% 100.0%
3950757 243.1.1.7 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.62 51.0 4.19e-01 95.0% 81.7%
3280323 243.1.1.7 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.62 51.0 4.33e-01 95.0% 86.7%
4286148 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.60 49.0 3.75e-01 93.3% 62.7%
4009799 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.60 43.0 3.55e-01 81.7% 42.9%
7101 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.60 51.0 3.38e-01 100.0% 47.8%
3781686 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 46.0 2.94e-01 86.7% 19.5%
4968484 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 45.0 3.01e-01 80.0% 33.9%
3540463 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.59 47.0 3.69e-01 91.7% 66.4%
1871017 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.59 47.0 3.52e-01 91.7% 56.0%
4927128 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.59 47.0 4.06e-01 91.7% 84.0%
3542540 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.59 47.0 3.92e-01 93.3% 76.5%
4968482 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 3.58e-01 80.0% 71.8%
3885295 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.58 46.0 3.64e-01 91.7% 67.2%
3921982 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.58 47.0 3.63e-01 93.3% 60.0%
3990413 2.1.1.141 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.57 44.0 4.25e-01 85.0% 81.4%
3613822 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 2.92e-01 95.0% 35.1%
3941192 11.1.1.673 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.57 43.0 3.90e-01 86.7% 85.6%
4439550 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.57 46.0 3.56e-01 91.7% 60.8%
3970330 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 46.0 3.65e-01 95.0% 74.8%
3972681 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 42.0 3.71e-01 83.3% 59.6%
3753700 12.5.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.56 40.0 2.95e-01 78.3% 78.3%
3589048 243.1.1.7 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.56 45.0 3.57e-01 95.0% 73.6%
3564378 372.1.1.1 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like › RnaseA 0.56 43.0 3.61e-01 88.3% 74.3%
3893747 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.55 44.0 3.45e-01 95.0% 63.3%
5055339 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.55 40.0 2.65e-01 80.0% 18.5%
3939766 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 41.0 2.70e-01 86.7% 37.8%
5079533 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 43.0 2.99e-01 90.0% 36.3%
4494197 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 39.0 3.21e-01 76.7% 51.8%
4416182 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.54 41.0 3.44e-01 83.3% 66.7%
9395 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.54 40.0 2.70e-01 81.7% 20.1%
3635188 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.53 42.0 2.60e-01 96.7% 27.3%
5010378 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.31e-01 95.0% 96.9%
5057921 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 42.0 2.82e-01 90.0% 35.5%
3385471 4998.1.1.0 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain 0.52 43.0 3.39e-01 98.3% 76.6%
3697493 5.1.5.70 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › TFIIIC_delta 0.52 41.0 2.61e-01 88.3% 17.7%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.95e-01 100.0% 66.7%
4796553 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 33.0 3.45e-01 71.7% 72.2%
4974362 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 39.0 2.69e-01 86.7% 95.2%
1900709 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 39.0 2.72e-01 88.3% 77.7%
3509095 3425.2.1.3 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.51 39.0 2.56e-01 90.0% 18.5%
3505178 11.1.1.673 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.51 38.0 3.32e-01 85.0% 77.1%
5037445 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 40.0 2.73e-01 91.7% 30.4%
3879785 11.1.1.640 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.51 35.0 2.99e-01 75.0% 84.5%
3573203 11.1.1.463 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_C17orf99 0.51 38.0 3.08e-01 85.0% 67.7%
3577548 331.12.1.0 ↗ a+b two layers › TBP-like › YugN-like › YugN-like 0.51 38.0 3.26e-01 86.7% 51.3%
3589216 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.50 38.0 2.63e-01 86.7% 80.4%
3286883 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.50 40.0 2.75e-01 93.3% 89.8%
5013876 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 39.0 2.65e-01 88.3% 34.1%
3058745 2484.1.1.97 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC 0.50 31.0 3.42e-01 71.7% 86.4%