←Back to structures

NC_023571.1__YP_009006573.1__CF81_gp29__00031

Bact-Vir

NC_023571.1__YP_009006573.1__CF81_gp29__00031

Identity

Accession:
NC_023571 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sozzivirus› Oenococcus_phage_phiS11

TaxID: 1432847

Cluster

View cluster (166 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 169-266
PDB
Domain cluster: rep: OR354850.1__WNM55334.1__CoNPh27_CDS0068__00068__D76-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03864.23 best Phage_cap_E 32.5 6.60e-08 100.0% 29.0%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.77 65.0 4.58e-01 100.0% 30.4%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.64 28.0 3.19e-01 86.7% 52.0%
4rlqA02 3.40.50.12820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 38.0 4.25e-01 83.7% 76.0%
1htwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 3.65e-01 82.7% 70.3%
4a8jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.73e-01 78.6% 26.7%
2x0kA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 41.0 3.32e-01 94.9% 45.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
333200 2485.3.1.1 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.75 67.0 4.68e-01 100.0% 31.7%
4984125 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.57 48.0 4.11e-01 95.9% 73.3%
3589784 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.54 47.0 3.50e-01 100.0% 66.3%
3593379 7585.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins 0.53 41.0 3.69e-01 91.8% 59.3%
4943742 2484.1.1.232 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › EutA 0.51 36.0 3.37e-01 79.6% 59.2%
5058546 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.51 44.0 2.76e-01 100.0% 86.3%
4379372 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.51 44.0 3.13e-01 100.0% 52.9%
3716967 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.50 42.0 2.91e-01 96.9% 85.6%
D2 medium residues 14-45_83-168_267-346
PDB
Domain cluster: rep: NC_062753.1__YP_010357483.1__M1M31_gp41__00041__D2-57_77-162_292-334
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03864.23 best Phage_cap_E 40.7 2.10e-10 46.0% 27.1%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bqwA01 3.15.30.10 Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like 0.66 59.0 5.82e-01 94.4% 100.0%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 22.0 2.85e-01 76.3% 61.7%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 24.0 2.89e-01 78.3% 59.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2640765 2485.3.1.1 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.78 69.0 5.55e-01 91.4% 95.2%
1005479 2485.3.1.1 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.77 73.0 5.88e-01 99.5% 100.0%
3965498 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.67 59.0 4.87e-01 90.9% 93.2%
3946670 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.65 61.0 5.44e-01 100.0% 97.1%
4031028 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.64 60.0 5.27e-01 100.0% 97.5%
3583655 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.62 54.0 4.52e-01 90.9% 92.5%
2831773 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.60 55.0 4.98e-01 99.5% 97.0%
2724409 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.59 55.0 4.96e-01 99.5% 97.4%
2553816 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.59 55.0 4.96e-01 99.5% 97.4%
3280463 3513.1.1.0 ↗ a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA 0.57 26.0 3.12e-01 76.8% 62.2%
4995674 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.56 52.0 4.71e-01 98.0% 95.3%
4596504 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.54 30.0 3.07e-01 78.3% 53.2%
3406485 1181.1.1.0 ↗ 0.53 20.0 3.34e-01 80.3% 98.6%
4074306 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 25.0 2.77e-01 92.4% 57.4%