←Back to structures

NC_023573.1__YP_009006763.1__CF75_gp092__00092

Bact-Vir

NC_023573.1__YP_009006763.1__CF75_gp092__00092

Identity

Accession:
NC_023573 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Kayvirus› Staphylococcus_phage_phiSA12

TaxID: 1450142

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-85
PDB
Domain cluster: rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00109__D71-157
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13411.13 best MerR_1 37.7 2.50e-09 62.0% 65.2%
PF00376.30 MerR 38.6 1.00e-09 48.1% 100.0%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.82 59.0 6.19e-01 81.0% 80.8%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.80 57.0 6.00e-01 83.5% 81.9%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 54.0 5.28e-01 81.0% 67.1%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 50.0 5.37e-01 84.8% 86.6%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 57.0 4.69e-01 88.6% 62.9%
6jgwA01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.67 55.0 4.73e-01 88.6% 72.7%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.66 56.0 4.77e-01 92.4% 74.6%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 54.0 4.58e-01 91.1% 74.6%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 55.0 4.79e-01 94.9% 73.6%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 52.0 4.64e-01 91.1% 85.8%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 52.0 4.84e-01 97.5% 82.8%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.18e-01 73.4% 53.7%
4iu9A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 46.0 2.91e-01 94.9% 89.6%
1a2zA00 3.40.630.20 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Peptidase C15, pyroglutamyl peptidase I-like 0.52 44.0 3.24e-01 94.9% 91.8%
2jiiA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 38.0 2.92e-01 78.5% 51.5%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.51 42.0 3.47e-01 97.5% 66.9%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.33e-01 96.2% 50.0%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.16e-01 100.0% 43.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.45e-01 87.3% 58.1%
2wvnA01 1.20.120.1020 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Prion-inhibition and propagation, HeLo domain 0.50 41.0 2.97e-01 87.3% 70.0%
3mk7A00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.50 40.0 2.56e-01 91.1% 28.3%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4668445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.85 56.0 6.60e-01 79.7% 96.4%
4994568 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.84 54.0 6.38e-01 83.5% 94.5%
5041445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.83 59.0 5.63e-01 81.0% 64.4%
4929856 101.1.9.18 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.82 57.0 5.48e-01 81.0% 63.3%
3970754 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 57.0 5.71e-01 81.0% 72.5%
2775358 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 57.0 5.01e-01 79.7% 52.7%
3289439 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 51.0 5.98e-01 79.7% 96.4%
3387406 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 55.0 5.00e-01 81.0% 55.2%
4520820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 53.0 5.50e-01 79.7% 74.7%
4101677 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 54.0 4.48e-01 81.0% 42.2%
4518241 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 54.0 5.53e-01 81.0% 76.0%
3281256 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 56.0 5.64e-01 87.3% 75.0%
4420911 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 53.0 4.40e-01 81.0% 42.2%
3954861 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 50.0 5.87e-01 74.7% 98.2%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 52.0 5.27e-01 81.0% 71.2%
3288390 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 52.0 5.40e-01 81.0% 77.3%
1827815 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 52.0 5.51e-01 81.0% 83.8%
4564454 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 62.0 5.53e-01 87.3% 76.2%
4504812 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 53.0 5.20e-01 81.0% 69.4%
3288205 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 52.0 5.18e-01 82.3% 71.2%
None — 0.73 51.0 5.43e-01 81.0% 82.9%
4254112 101.1.9.18 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.72 51.0 4.92e-01 77.2% 64.4%
2325046 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 61.0 5.26e-01 91.1% 71.7%
3288603 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 50.0 5.19e-01 81.0% 77.3%
3281073 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 60.0 5.40e-01 89.9% 77.1%
3291393 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 60.0 5.19e-01 89.9% 71.3%
3590098 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 60.0 5.23e-01 92.4% 76.5%
3285380 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 59.0 5.03e-01 91.1% 72.0%
3958148 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 59.0 4.87e-01 91.1% 65.2%
3966276 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 62.0 5.45e-01 94.9% 80.9%
1394838 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.69 57.0 4.69e-01 88.6% 62.9%
3586960 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.69 55.0 5.16e-01 84.8% 70.5%
4197446 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.69 58.0 4.84e-01 91.1% 80.0%
3282255 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.69 58.0 5.20e-01 91.1% 77.8%
4980892 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 61.0 5.18e-01 93.7% 66.7%
3282573 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 58.0 4.96e-01 92.4% 75.2%
3945289 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 56.0 4.78e-01 88.6% 65.6%
3290900 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 57.0 4.76e-01 89.9% 60.8%
3284686 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.68 55.0 3.96e-01 88.6% 93.9%
3291061 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 61.0 5.25e-01 94.9% 72.2%
4951929 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 47.0 4.85e-01 79.7% 76.0%
3291218 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 57.0 4.80e-01 91.1% 66.2%
3943313 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 59.0 5.14e-01 94.9% 82.6%
2527708 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.67 55.0 4.55e-01 89.9% 60.1%
171609 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 59.0 4.90e-01 94.9% 62.4%
3587879 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.67 56.0 4.99e-01 89.9% 75.5%
3387245 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 54.0 4.47e-01 86.1% 68.9%
4034325 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 59.0 4.97e-01 94.9% 65.6%
3966930 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.67 58.0 5.16e-01 94.9% 85.5%
4536234 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.66 55.0 4.88e-01 91.1% 75.7%
4284807 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.66 54.0 4.49e-01 89.9% 61.4%
4672676 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.66 55.0 4.50e-01 89.9% 77.9%
3974460 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.66 55.0 4.64e-01 91.1% 69.2%
4488952 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.66 54.0 4.85e-01 89.9% 78.2%
1844183 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.65 54.0 4.56e-01 91.1% 70.5%
4031764 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.65 53.0 4.44e-01 89.9% 71.0%
3281871 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.65 53.0 4.69e-01 91.1% 66.7%
3290892 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.65 54.0 4.88e-01 89.9% 75.2%
3278826 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.64 53.0 4.62e-01 89.9% 75.0%
3589820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 53.0 4.53e-01 89.9% 76.8%
388408 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 54.0 4.69e-01 91.1% 68.3%
4668740 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 51.0 4.65e-01 91.1% 64.8%
3948487 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.64 55.0 4.63e-01 94.9% 67.4%
4470278 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.64 52.0 4.63e-01 89.9% 80.9%
4334333 101.1.9.1 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind 0.64 55.0 4.54e-01 94.9% 67.1%
3980766 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 54.0 4.86e-01 93.7% 80.9%
2665492 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.63 54.0 4.45e-01 92.4% 63.3%
3284505 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.63 52.0 4.62e-01 91.1% 70.4%
4117490 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.63 54.0 4.59e-01 94.9% 63.8%
3974607 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 54.0 4.58e-01 94.9% 65.4%
4270095 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 44.0 4.62e-01 73.4% 84.3%
4061721 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.62 53.0 4.51e-01 94.9% 71.5%
3954355 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.61 52.0 4.69e-01 93.7% 77.3%
4196673 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.60 40.0 4.57e-01 78.5% 100.0%
3941467 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.60 54.0 5.45e-01 98.7% 98.8%
3946914 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.58 49.0 4.21e-01 94.9% 64.6%
4963813 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.53 43.0 4.16e-01 87.3% 80.0%
5077994 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.53 43.0 3.52e-01 87.3% 51.4%
4943661 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.50 35.0 2.56e-01 84.8% 27.1%