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NC_023587.1__YP_009008145.1__S-MbCM7_011__00011

Bact-Vir

NC_023587.1__YP_009008145.1__S-MbCM7_011__00011

Identity

Accession:
NC_023587 ↗
Kingdom:
phage

Quality

64.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Sedonavirus› Synechococcus_phage_ACG-2014h

TaxID: 1340810

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-110
PDB
Domain cluster: rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00132__D29-77_93-127
D2 high residues 497-608
PDB
Domain cluster: rep: MT366761.1__QJT71066.1__GR11A_00028__00028__D245-348
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03160.21 best Calx-beta 53.6 3.10e-14 97.3% 73.1%
D3 medium residues 204-248_305-337
PDB
D4 medium residues 249-304
PDB
D5 medium residues 670-765
PDB
Domain cluster: rep: MH517022.1__AXF41504.1__SHAb15599_00150__00133__D461-566
D6 medium residues 857-965
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o14A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.67 46.0 4.19e-01 85.3% 52.7%
1w0nA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 44.0 4.33e-01 75.2% 67.5%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.62 42.0 4.06e-01 76.1% 62.0%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 45.0 4.19e-01 78.9% 61.3%
7mjrA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 46.0 4.38e-01 79.8% 70.2%
2y8kA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 43.0 3.98e-01 89.0% 55.2%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 46.0 4.35e-01 87.2% 65.9%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.38e-01 81.7% 100.0%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 4.28e-01 78.9% 80.0%
2bgoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 42.0 4.14e-01 81.7% 68.1%
1xo8A00 2.60.40.1820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 42.0 3.78e-01 72.5% 79.5%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 44.0 3.92e-01 78.0% 59.5%
4p02B01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 44.0 4.14e-01 78.0% 75.2%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 3.94e-01 77.1% 62.6%
5f7uA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 4.09e-01 84.4% 65.9%
7ehgC01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 43.0 4.10e-01 78.0% 66.7%
5jouA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 38.0 3.54e-01 75.2% 51.4%
4zxeC00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 42.0 3.90e-01 78.0% 61.0%
5vt8C01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 39.0 4.07e-01 70.6% 85.1%
2zxqA05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 45.0 3.72e-01 85.3% 96.5%
3bwsA01 2.60.40.3070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 4.25e-01 87.2% 90.5%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 3.38e-01 81.7% 89.5%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.56 39.0 3.93e-01 77.1% 71.8%
4hkjD00 2.60.240.30 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › 0.56 46.0 3.91e-01 90.8% 84.4%
4xvhA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 37.0 3.76e-01 70.6% 69.2%
3bfqG00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.55 42.0 3.94e-01 80.7% 97.0%
3j4uH00 2.60.120.1110 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 4.23e-01 92.7% 75.0%
1w3fA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.53 37.0 3.34e-01 73.4% 78.8%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 37.0 3.92e-01 72.5% 100.0%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.60e-01 85.3% 79.5%
5tflB02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 38.0 3.77e-01 75.2% 84.8%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 3.53e-01 77.1% 65.8%
3rfzA02 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.52 39.0 3.82e-01 79.8% 99.2%
3bb6C00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 33.0 3.32e-01 78.0% 62.5%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.51 42.0 4.15e-01 89.0% 93.8%
3b34A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.50 35.0 3.60e-01 71.6% 90.2%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218202 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.66 49.0 4.69e-01 77.1% 98.4%
3890782 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.64 48.0 4.44e-01 80.7% 78.6%
3523999 11.1.1.616 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_KY 0.63 44.0 4.57e-01 78.0% 78.0%
3507604 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 4.59e-01 70.6% 81.1%
3348556 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.62 47.0 4.02e-01 82.6% 49.7%
3606377 11.2.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 0.62 44.0 3.73e-01 74.3% 89.7%
3602023 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.61 48.0 4.80e-01 87.2% 82.7%
3429003 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.61 47.0 3.97e-01 83.5% 50.3%
5040751 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 46.0 4.59e-01 78.9% 79.1%
3404647 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 44.0 4.73e-01 81.7% 90.0%
1316605 10.32.1.50 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5077 0.61 43.0 4.07e-01 78.0% 61.1%
5051003 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 45.0 4.49e-01 78.0% 82.7%
5010855 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 4.24e-01 73.4% 73.9%
3936407 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 44.0 4.73e-01 88.1% 92.2%
3277196 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 43.0 4.75e-01 75.2% 100.0%
3302463 207.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.60 46.0 3.03e-01 80.7% 24.9%
5052269 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 44.0 4.49e-01 77.1% 83.8%
157016 10.32.1.51 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_35 0.60 42.0 4.14e-01 81.7% 68.1%
3705262 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.26e-01 72.5% 87.6%
5061073 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.59 43.0 4.07e-01 77.1% 87.4%
142653 10.32.1.40 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD2 0.59 45.0 3.78e-01 80.7% 75.5%
1563513 1.1.8.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Ski7_3rd 0.58 41.0 4.21e-01 74.3% 100.0%
3580101 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 42.0 3.77e-01 77.1% 97.5%
4929207 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 42.0 4.56e-01 76.1% 94.3%
2426587 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 42.0 3.93e-01 78.0% 100.0%
5083813 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.66e-01 75.2% 90.3%
3461888 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 4.07e-01 90.8% 85.7%
3643707 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.64e-01 77.1% 79.4%
4929038 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 4.27e-01 78.9% 100.0%
3626147 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.56 38.0 4.25e-01 75.2% 100.0%
3857986 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 3.77e-01 72.5% 71.2%
4003995 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 45.0 4.08e-01 90.8% 64.0%
3407712 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 43.0 4.45e-01 84.4% 100.0%
3268673 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 40.0 4.32e-01 78.0% 95.6%
3445985 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 46.0 3.42e-01 93.6% 43.3%
3619352 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 45.0 4.02e-01 91.7% 74.4%
4962830 10.1.2.197 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF7263 0.54 41.0 4.30e-01 79.8% 97.9%
3894462 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.54 39.0 3.53e-01 77.1% 58.7%
5037548 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 43.0 3.95e-01 86.2% 66.4%
4931128 11.1.1.257 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Top6b_C 0.54 37.0 3.68e-01 71.6% 82.6%
4961202 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 36.0 3.91e-01 71.6% 100.0%
5055778 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 35.0 3.56e-01 70.6% 68.6%
5058953 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.82e-01 86.2% 80.7%
5075927 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.51 38.0 4.09e-01 78.9% 100.0%
3648822 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 4.05e-01 95.4% 92.0%