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NC_023587.1__YP_009008310.1__S-MbCM7_176__00176
Bact-VirNC_023587.1__YP_009008310.1__S-MbCM7_176__00176
Identity
- Accession:
- NC_023587 ↗
- Kingdom:
- phage
Quality
70.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Sedonavirus›
Synechococcus_phage_ACG-2014h
TaxID: 1340810
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1000-1120
Domain cluster:
rep: GU936714.1__ADF42387.1__S-CBS2_gp031__00031__D564-679
D2
medium
residues 180-206
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iokA02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.69 | 53.0 | 3.87e-01 | 100.0% | 30.4% |
| 3iveA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.59 | 41.0 | 2.42e-01 | 100.0% | 8.9% |
| 6z30A01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.52 | 36.0 | 2.59e-01 | 100.0% | 23.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4537352 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.73 | 55.0 | 3.56e-01 | 100.0% | 18.8% |
| 5084062 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.60 | 43.0 | 3.22e-01 | 100.0% | 28.6% |
| 3928687 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 44.0 | 2.64e-01 | 100.0% | 9.7% |
| 3244492 | 389.1.1.16 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 | 0.52 | 34.0 | 3.36e-01 | 92.6% | 86.7% |
| 3993237 | 387.1.5.24 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein | 0.51 | 34.0 | 2.80e-01 | 85.2% | 35.1% |
D3
medium
residues 848-905