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NC_023590.1__YP_009008555.1__CH11_gp51__00051

Bact-Vir

NC_023590.1__YP_009008555.1__CH11_gp51__00051

Identity

Accession:
NC_023590 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lokivirus› Acinetobacter_phage_IMEAB3

TaxID: 1458669

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3aqlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.68 53.0 4.11e-01 88.1% 61.4%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.68 56.0 4.01e-01 93.2% 94.9%
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.67 55.0 3.99e-01 93.2% 81.0%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.66 51.0 3.82e-01 89.8% 97.0%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 54.0 4.03e-01 94.9% 65.8%
3djaA01 1.20.920.70 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.64 47.0 3.60e-01 100.0% 33.1%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.63 44.0 4.07e-01 74.6% 70.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.63 44.0 3.99e-01 74.6% 61.0%
3l0mA02 1.20.1280.280 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 52.0 4.76e-01 93.2% 97.4%
2pjsA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 47.0 4.10e-01 91.5% 100.0%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 51.0 4.07e-01 100.0% 86.8%
6gc1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 43.0 3.04e-01 81.4% 93.2%
1xkzC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 48.0 3.26e-01 100.0% 69.4%
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 47.0 3.46e-01 91.5% 62.8%
4byfC02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 44.0 3.45e-01 96.6% 50.3%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 44.0 3.37e-01 98.3% 78.4%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 46.0 2.91e-01 100.0% 84.9%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.55 36.0 3.27e-01 96.6% 46.5%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 3.76e-01 78.0% 64.4%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.24e-01 98.3% 48.3%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 44.0 3.66e-01 89.8% 89.0%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 38.0 2.88e-01 78.0% 32.6%
1sp8C01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 37.0 2.83e-01 81.4% 49.1%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 44.0 3.51e-01 100.0% 74.8%
5d6nA00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 42.0 2.55e-01 100.0% 36.5%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.51 42.0 3.44e-01 91.5% 99.1%
3wwxA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 45.0 2.81e-01 100.0% 70.9%
4he8D00 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.50 39.0 2.88e-01 84.7% 41.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950477 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.79 69.0 6.38e-01 98.3% 90.7%
5078470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 41.0 3.59e-01 83.1% 37.6%
3176845 373.1.1.0 ↗ few secondary structure elements › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain 0.69 38.0 4.66e-01 74.6% 91.4%
3931081 304.57.1.1 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.68 40.0 3.02e-01 100.0% 25.9%
3699638 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 38.0 2.17e-01 78.0% 5.0%
3601190 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 3.60e-01 89.8% 36.5%
3715317 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 46.0 2.85e-01 76.3% 32.4%
6344 331.6.1.1 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952 0.64 44.0 4.11e-01 74.6% 70.5%
3603312 814.1.1.1 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Rv2949c-like 0.63 46.0 3.48e-01 83.1% 47.2%
4679004 192.7.1.3 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.62 52.0 4.37e-01 93.2% 82.0%
5075282 331.6.1.0 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain 0.62 43.0 4.12e-01 74.6% 71.4%
4240325 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.60 39.0 3.41e-01 94.9% 43.3%
3939178 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.59 50.0 3.61e-01 96.6% 88.1%
4115430 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.59 39.0 3.43e-01 96.6% 44.4%
4024912 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.59 47.0 3.73e-01 88.1% 47.5%
4572271 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.56 47.0 3.21e-01 100.0% 70.2%
3506125 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 39.0 3.08e-01 71.2% 63.3%
3721249 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 36.0 3.78e-01 98.3% 70.9%
3410884 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.56 38.0 3.78e-01 72.9% 92.2%
3838248 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.55 40.0 3.46e-01 81.4% 78.1%
4989374 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.54 44.0 3.93e-01 91.5% 77.6%
4965521 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.53 42.0 3.56e-01 91.5% 91.8%
3934175 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.53 40.0 3.21e-01 88.1% 40.0%
4388719 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.53 37.0 3.38e-01 76.3% 83.3%
4989913 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 44.0 2.84e-01 94.9% 20.0%
4195481 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.53 37.0 3.28e-01 74.6% 81.1%
4659415 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.53 36.0 3.28e-01 74.6% 82.2%
3975425 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.52 40.0 3.36e-01 84.7% 88.6%
3184125 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.52 44.0 3.58e-01 100.0% 66.7%
3705135 101.17.1.3 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_1 0.52 39.0 3.51e-01 100.0% 56.2%
3342799 1.1.1.28 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.51 44.0 2.68e-01 100.0% 63.6%
4956678 7589.1.1.2 ↗ a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C 0.51 40.0 3.15e-01 93.2% 66.9%