←Back to structures

NC_023593.1__YP_009008820.1__CH16_gp126__00126

Bact-Vir

NC_023593.1__YP_009008820.1__CH16_gp126__00126

Identity

Accession:
NC_023593 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Nieuwekanaalvirus› Escherichia_phage_KBNP1711

TaxID: 1436889

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-161
PDB
Domain cluster: rep: NC_070981.1__YP_010672912.1__PQC42_gp001__00001__D163-285
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.72 59.0 6.24e-01 100.0% 99.1%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.71 52.0 5.54e-01 98.3% 89.0%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 37.0 4.96e-01 92.4% 100.0%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.70 51.0 5.73e-01 89.8% 100.0%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.70 59.0 6.11e-01 100.0% 99.1%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 63.0 5.53e-01 100.0% 71.1%
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 63.0 5.49e-01 100.0% 70.3%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 60.0 5.51e-01 100.0% 76.8%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 60.0 5.52e-01 100.0% 76.5%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 60.0 5.18e-01 100.0% 83.2%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 57.0 5.42e-01 96.6% 79.6%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 58.0 5.05e-01 100.0% 83.2%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.64 33.0 4.43e-01 97.5% 98.3%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 57.0 5.21e-01 100.0% 99.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 35.0 4.33e-01 99.2% 94.0%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 55.0 4.86e-01 100.0% 67.2%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.62 54.0 4.56e-01 100.0% 99.5%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.62 45.0 4.20e-01 75.4% 100.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 34.0 4.37e-01 94.1% 100.0%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.61 51.0 4.55e-01 91.5% 98.2%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.61 42.0 4.14e-01 72.0% 82.4%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 54.0 4.97e-01 100.0% 99.4%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 54.0 4.88e-01 100.0% 74.4%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.60 54.0 5.04e-01 100.0% 85.9%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 4.12e-01 77.1% 88.4%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.59 51.0 5.22e-01 96.6% 100.0%
1k38A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 46.0 3.59e-01 81.4% 84.1%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.59 51.0 5.04e-01 99.2% 87.7%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 53.0 5.12e-01 99.2% 99.2%
5ctnA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 45.0 3.57e-01 81.4% 84.5%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.57 50.0 4.15e-01 98.3% 61.8%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.57 42.0 3.99e-01 92.4% 65.0%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 50.0 4.75e-01 100.0% 95.8%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.56 49.0 4.43e-01 100.0% 73.5%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 50.0 3.67e-01 96.6% 91.4%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 49.0 4.44e-01 99.2% 82.4%
2essA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 35.0 3.30e-01 96.6% 52.4%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 46.0 3.28e-01 92.4% 96.9%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 39.0 3.81e-01 72.0% 81.9%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 43.0 4.12e-01 84.7% 72.9%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.55 46.0 3.95e-01 94.9% 88.8%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 4.42e-01 100.0% 85.1%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.53 43.0 4.09e-01 89.0% 90.7%
2qwzA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.58e-01 71.2% 96.2%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 3.24e-01 84.7% 97.0%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.53 46.0 3.49e-01 97.5% 99.3%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 46.0 4.34e-01 99.2% 86.2%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 42.0 4.00e-01 86.4% 85.4%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 46.0 4.28e-01 99.2% 83.6%
1nqfA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 38.0 2.59e-01 75.4% 31.0%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 4.23e-01 96.6% 79.9%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 46.0 3.60e-01 99.2% 93.5%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.51 42.0 3.73e-01 93.2% 100.0%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 45.0 3.62e-01 99.2% 64.1%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.73e-01 83.1% 98.6%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.50 42.0 3.90e-01 92.4% 82.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.71 51.0 5.69e-01 98.3% 95.7%
142989 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 63.0 5.49e-01 100.0% 70.3%
2537367 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 63.0 5.39e-01 100.0% 66.8%
2792228 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 62.0 5.62e-01 100.0% 74.1%
4793345 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.68 57.0 5.92e-01 98.3% 100.0%
3474038 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 61.0 5.80e-01 100.0% 97.1%
3972703 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.68 54.0 5.70e-01 99.2% 97.1%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.66 52.0 5.53e-01 99.2% 100.0%
5018124 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.65 45.0 5.10e-01 83.1% 98.8%
169039 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.61 42.0 4.14e-01 72.0% 82.4%
5034702 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 43.0 3.96e-01 72.9% 75.2%
3968293 71.2.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › DUF3108 0.60 48.0 4.06e-01 89.0% 84.8%
3487199 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 47.0 4.94e-01 96.6% 95.4%
4956163 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 53.0 4.60e-01 100.0% 96.7%
4428765 12.3.1.15 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › AmyA-gluTrfs_C 0.58 53.0 3.90e-01 97.5% 97.6%
3965134 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 49.0 4.99e-01 92.4% 93.9%
3967717 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.58 47.0 3.51e-01 88.1% 98.4%
3783096 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 50.0 4.56e-01 99.2% 77.0%
3695698 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.57 45.0 4.25e-01 83.1% 78.6%
3712535 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.57 43.0 4.76e-01 89.8% 100.0%
3797033 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 47.0 4.29e-01 89.0% 69.0%
4610039 5084.5.4.9 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 0.56 48.0 3.56e-01 93.2% 85.4%
3399941 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 48.0 4.85e-01 97.5% 93.3%
3615838 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.55 39.0 3.81e-01 73.7% 74.8%
3472948 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.55 49.0 4.75e-01 100.0% 97.0%
3282535 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.55 49.0 3.81e-01 99.2% 93.5%
3268196 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 48.0 4.48e-01 99.2% 84.7%
3474675 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.54 48.0 3.52e-01 99.2% 48.8%
4026812 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 48.0 4.38e-01 99.2% 78.8%
3895620 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 48.0 4.35e-01 100.0% 77.0%
3184430 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.54 47.0 3.38e-01 99.2% 45.0%
3512069 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.54 38.0 3.24e-01 73.7% 56.5%
3789706 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 47.0 4.22e-01 99.2% 76.5%
3515384 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 47.0 4.42e-01 100.0% 82.7%
5009761 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.53 47.0 4.43e-01 100.0% 89.0%
3512529 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.53 49.0 4.42e-01 100.0% 78.1%
3619070 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 47.0 4.24e-01 100.0% 78.8%
3217504 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.53 42.0 4.42e-01 100.0% 97.1%
3403106 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 46.0 4.19e-01 99.2% 77.0%
4992003 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.52 45.0 4.41e-01 100.0% 88.1%
1716664 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.52 36.0 2.49e-01 71.2% 34.4%
4204465 881.1.1.36 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF25844 0.52 40.0 3.86e-01 80.5% 78.5%
3255116 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.52 45.0 3.33e-01 98.3% 48.4%
3217918 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.52 45.0 3.27e-01 97.5% 55.2%
3387861 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.50 42.0 4.29e-01 94.9% 94.8%