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NC_023594.2__YP_009008850.1__Spp001_30__00030

Bact-Vir

NC_023594.2__YP_009008850.1__Spp001_30__00030

Identity

Accession:
NC_023594 ↗
Kingdom:
phage

Quality

68.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chaseviridae› Yushanvirus› Shewanella_phage_Spp001

TaxID: 1445859

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-153
PDB
D2 high residues 163-320
PDB
Domain cluster: rep: KU885988.1__ANJ20734.1__DSp06_gp77__00077__D30-142
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF01966.29 best HD 24.2 4.80e-05 76.6% 56.9%
PF13023.13 HD_3 33.4 5.90e-08 65.2% 51.5%
PF12917.14 YfbR-like 34.9 1.80e-08 63.3% 46.2%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tk8A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.86 82.0 7.64e-01 100.0% 96.3%
1xx7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.84 79.0 7.71e-01 99.4% 99.4%
4dmbB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.84 79.0 7.41e-01 100.0% 91.1%
2paqA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.83 79.0 7.61e-01 100.0% 98.9%
3mzoB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.83 78.0 7.03e-01 100.0% 89.5%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.79 74.0 7.25e-01 100.0% 94.0%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.76 71.0 6.60e-01 100.0% 89.7%
2gz4A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.75 69.0 6.35e-01 98.1% 79.0%
3nqwA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.64 59.0 5.71e-01 98.7% 92.7%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 42.0 4.37e-01 81.0% 85.7%
3aqtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 38.0 3.59e-01 70.9% 63.1%
3peuB00 1.25.40.510 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › GLE1-like 0.53 39.0 3.21e-01 76.6% 56.9%
2h8oA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 41.0 3.42e-01 83.5% 52.3%
3pvlA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.51 42.0 3.84e-01 86.7% 71.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4039998 131.1.1.9 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › YfbR-like 0.89 85.0 7.81e-01 100.0% 94.9%
5047096 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.89 84.0 7.62e-01 100.0% 90.2%
4979977 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.88 82.0 7.75e-01 98.7% 98.4%
3386221 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.86 81.0 7.09e-01 100.0% 98.2%
4995646 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.85 81.0 7.70e-01 100.0% 98.3%
3597759 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.85 81.0 7.36e-01 100.0% 87.5%
5024310 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.84 80.0 7.64e-01 100.0% 98.9%
161426 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.84 80.0 7.70e-01 99.4% 99.4%
5011113 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.83 79.0 7.59e-01 99.4% 100.0%
392120 131.1.1.9 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › YfbR-like 0.83 78.0 7.02e-01 100.0% 89.1%
4011494 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.83 78.0 7.30e-01 100.0% 94.7%
4955962 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.82 76.0 7.44e-01 96.8% 100.0%
5067383 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.82 77.0 7.38e-01 98.7% 97.7%
3971047 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.80 76.0 7.26e-01 100.0% 95.6%
4183693 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.75 70.0 6.45e-01 98.7% 82.1%
4790 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.75 69.0 6.35e-01 98.1% 79.0%
3964980 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.65 60.0 5.51e-01 98.1% 86.5%
3818500 109.4.1.222 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB 0.60 34.0 3.38e-01 91.8% 51.5%