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NC_023599.1__YP_009009192.1__CH06_gp48__00048

Bact-Vir

Identity

Accession:: NC_023599 ↗
Kingdom:: phage

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Camtrevirus› Bacillus_phage_phiCM3

TaxID: 1357713

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-69

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4lduA03	2.30.30.1040	Mainly Beta › Roll › SH3 type barrels. ›	0.69	48.0	4.33e-01	75.0%	95.6%
3o4fH02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.58	43.0	2.95e-01	89.6%	89.0%
1vw4G00	3.40.5.10	Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain	0.57	42.0	4.06e-01	81.2%	80.0%
2i6gB00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.56	38.0	2.60e-01	72.9%	46.7%
8gjaD01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	40.0	2.60e-01	85.4%	80.4%
2dn6A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.54	36.0	2.87e-01	70.8%	79.1%
1n9pA00	2.60.40.1400	Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1	0.54	37.0	2.57e-01	75.0%	60.4%
2imzA00	2.170.16.10	Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain	0.53	43.0	3.15e-01	93.8%	58.5%
1kbaA00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.53	43.0	3.96e-01	100.0%	69.7%
1e62A01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.51	41.0	3.11e-01	91.7%	72.7%
2xzmZ00	3.30.1230.20	Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21	0.51	42.0	3.40e-01	95.8%	56.7%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4311108	4076.1.1.1 ↗	a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N	0.60	43.0	3.92e-01	77.1%	63.1%
3002315	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.60	39.0	3.48e-01	77.1%	42.9%
3875439	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.58	40.0	3.02e-01	77.1%	61.5%
1420591	4076.1.1.1 ↗	a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N	0.57	42.0	4.06e-01	81.2%	80.0%
4020754	2007.1.1.32 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HET	0.55	38.0	2.63e-01	75.0%	28.7%
3992848	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.54	37.0	3.00e-01	72.9%	80.9%
None	—		0.53	40.0	3.16e-01	100.0%	35.8%
3509042	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	38.0	2.87e-01	79.2%	67.7%
3956202	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.52	39.0	2.56e-01	91.7%	93.3%
4961820	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.52	39.0	3.80e-01	93.8%	81.7%
4871383	1.1.2.26 ↗	beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6	0.51	42.0	3.51e-01	97.9%	82.8%
4614439	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.50	36.0	3.18e-01	81.2%	96.2%
3731506	2007.1.1.32 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HET	0.50	35.0	2.52e-01	81.2%	37.7%