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NC_023602.1__YP_009009479.1__ST32HC_8__00008
Bact-VirNC_023602.1__YP_009009479.1__ST32HC_8__00008
Identity
- Accession:
- NC_023602 ↗
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Taxonomy
TaxID: 1445729
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 54-83
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.84 | 67.0 | 4.87e-01 | 100.0% | 33.3% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.79 | 60.0 | 5.60e-01 | 100.0% | 71.1% |
| 3sdgA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 57.0 | 5.35e-01 | 96.7% | 73.8% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.72 | 56.0 | 4.70e-01 | 100.0% | 69.4% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.69 | 51.0 | 4.04e-01 | 80.0% | 52.5% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.69 | 53.0 | 4.28e-01 | 96.7% | 47.1% |
| 3ugsB00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.69 | 54.0 | 3.37e-01 | 100.0% | 23.6% |
| 5k9xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 54.0 | 3.24e-01 | 100.0% | 45.6% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.67 | 54.0 | 3.68e-01 | 100.0% | 56.3% |
| 3tw5A02 | 3.30.40.240 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Transglutaminase elicitor, body domain | 0.67 | 48.0 | 3.86e-01 | 100.0% | 46.3% |
| 2euiA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 43.0 | 3.14e-01 | 100.0% | 22.1% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.65 | 50.0 | 3.77e-01 | 100.0% | 97.8% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 49.0 | 4.58e-01 | 100.0% | 71.7% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.65 | 46.0 | 3.36e-01 | 76.7% | 74.7% |
| 5x68A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 49.0 | 2.84e-01 | 100.0% | 84.4% |
| 3fnnA03 | 6.10.140.440 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 48.0 | 4.45e-01 | 93.3% | 62.8% |
| 3hj6A03 | 6.10.140.490 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 47.0 | 4.70e-01 | 100.0% | 82.9% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 53.0 | 3.55e-01 | 100.0% | 73.5% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.63 | 50.0 | 4.08e-01 | 96.7% | 59.4% |
| 5dnyA03 | 6.10.10.50 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Mre11, C-terminal domain-like | 0.63 | 46.0 | 4.24e-01 | 90.0% | 60.9% |
| 1vm7B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 48.0 | 2.83e-01 | 100.0% | 9.8% |
| 4e12A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 47.0 | 3.02e-01 | 100.0% | 68.4% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 49.0 | 3.76e-01 | 90.0% | 40.8% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 47.0 | 2.78e-01 | 100.0% | 9.8% |
| 3c3dA02 | 1.10.8.240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain | 0.61 | 42.0 | 3.28e-01 | 100.0% | 27.3% |
| 2p61A00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.61 | 49.0 | 3.34e-01 | 93.3% | 25.4% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 50.0 | 4.46e-01 | 100.0% | 83.7% |
| 1ryuA00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.57 | 46.0 | 3.20e-01 | 96.7% | 80.8% |
| 7ue1B01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 39.0 | 2.79e-01 | 100.0% | 23.6% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 44.0 | 3.33e-01 | 100.0% | 39.4% |
| 6orkA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 41.0 | 2.46e-01 | 93.3% | 12.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024787 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.80 | 63.0 | 4.08e-01 | 100.0% | 19.3% |
| 3366426 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.77 | 59.0 | 5.13e-01 | 100.0% | 52.7% |
| 5028556 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.70 | 54.0 | 3.29e-01 | 100.0% | 13.2% |
| 4238791 | 604.15.1.3 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › GA_3 | 0.65 | 49.0 | 4.24e-01 | 83.3% | 52.0% |
| 3938192 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.65 | 53.0 | 3.45e-01 | 100.0% | 65.0% |
| 5054523 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.64 | 51.0 | 3.28e-01 | 100.0% | 37.1% |
| 3696409 | 2486.1.1.15 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans, ACCA | 0.63 | 48.0 | 2.65e-01 | 100.0% | 30.9% |
| 4174713 | 192.1.1.2 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › GreA_GreB_N | 0.63 | 48.0 | 3.63e-01 | 90.0% | 62.5% |
| 3166525 | 5.1.4.569 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_HB | 0.61 | 50.0 | 3.36e-01 | 100.0% | 24.4% |
| 3938667 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.60 | 41.0 | 3.29e-01 | 100.0% | 34.4% |
| 3264733 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.57 | 47.0 | 3.38e-01 | 100.0% | 45.3% |
| 3375081 | 101.1.11.87 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF7890 | 0.54 | 39.0 | 3.73e-01 | 100.0% | 71.1% |
D2
medium
residues 90-157
Domain cluster:
rep: MN103533.1__QEA10810.1__X__00042__D59-125