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NC_023603.1__YP_009009613.1__CG91_gp056__00056
Bact-VirNC_023603.1__YP_009009613.1__CG91_gp056__00056
Identity
- Accession:
- NC_023603 ↗
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Taxonomy
TaxID: 1463809
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-47
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 63.0 | 6.00e-01 | 79.5% | 70.6% |
| 2l8kA00 | 3.30.1330.220 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha | 0.82 | 59.0 | 4.23e-01 | 79.5% | 27.6% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.77 | 55.0 | 4.58e-01 | 77.3% | 48.1% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 53.0 | 4.96e-01 | 75.0% | 60.7% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 54.0 | 4.58e-01 | 77.3% | 48.6% |
| 4fd4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.75 | 65.0 | 4.14e-01 | 100.0% | 51.4% |
| 6wm6A01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.74 | 53.0 | 3.35e-01 | 77.3% | 14.9% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.74 | 64.0 | 4.26e-01 | 100.0% | 76.3% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.74 | 53.0 | 5.15e-01 | 77.3% | 69.4% |
| 4gl8A03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.74 | 52.0 | 3.38e-01 | 77.3% | 16.1% |
| 2wolA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.73 | 55.0 | 3.47e-01 | 84.1% | 16.5% |
| 1eg3A02 | 6.10.140.70 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 47.0 | 4.62e-01 | 72.7% | 67.3% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 47.0 | 3.32e-01 | 72.7% | 77.8% |
| 1dt9A01 | 3.30.960.10 | Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 | 0.67 | 55.0 | 4.24e-01 | 95.5% | 58.1% |
| 1tmxB00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.66 | 58.0 | 3.51e-01 | 100.0% | 28.2% |
| 2xsgB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.63 | 44.0 | 2.68e-01 | 72.7% | 91.6% |
| 4fb2A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 44.0 | 2.65e-01 | 93.2% | 18.6% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.54 | 47.0 | 3.70e-01 | 100.0% | 61.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3703000 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.86 | 62.0 | 5.29e-01 | 77.3% | 48.6% |
| 4942548 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.85 | 61.0 | 4.13e-01 | 77.3% | 24.0% |
| 3269593 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.84 | 59.0 | 4.79e-01 | 75.0% | 41.2% |
| 4666568 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.81 | 60.0 | 3.48e-01 | 79.5% | 10.6% |
| 3482900 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.80 | 58.0 | 4.79e-01 | 79.5% | 45.0% |
| 4093386 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.79 | 58.0 | 4.98e-01 | 79.5% | 54.3% |
| 3969538 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.78 | 55.0 | 5.12e-01 | 75.0% | 100.0% |
| 4347813 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.77 | 56.0 | 4.96e-01 | 84.1% | 53.8% |
| 3261605 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.75 | 52.0 | 4.35e-01 | 75.0% | 41.2% |
| 5055477 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.74 | 53.0 | 4.38e-01 | 77.3% | 53.8% |
| 4680782 | 1054.1.1.1 ↗ | alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C | 0.69 | 49.0 | 5.12e-01 | 77.3% | 87.5% |
| 4026566 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.68 | 50.0 | 3.04e-01 | 79.5% | 11.1% |
| 4215468 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.64 | 57.0 | 3.21e-01 | 100.0% | 65.7% |
| 3612126 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.63 | 50.0 | 5.06e-01 | 100.0% | 97.8% |