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NC_023610.1__YP_009010090.1__CF95_gp037__00037

Bact-Vir

NC_023610.1__YP_009010090.1__CF95_gp037__00037

Identity

Accession:
NC_023610 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Iapetusvirus› Erwinia_phage_PhiEaH1

TaxID: 1401669

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-101
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.78 50.0 5.48e-01 75.0% 79.2%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.68 33.0 4.57e-01 81.5% 100.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 41.0 4.96e-01 97.8% 98.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 5.20e-01 98.9% 94.6%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.81e-01 72.8% 94.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 5.01e-01 98.9% 92.0%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.55e-01 71.7% 100.0%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 39.0 4.78e-01 96.7% 100.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 43.0 4.92e-01 100.0% 100.0%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 34.0 3.34e-01 72.8% 54.6%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.39e-01 75.0% 98.5%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 32.0 3.19e-01 71.7% 52.6%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.32e-01 76.1% 96.8%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 37.0 3.00e-01 70.7% 79.2%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 3.01e-01 93.5% 50.0%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 36.0 3.54e-01 75.0% 94.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.86 47.0 6.28e-01 70.7% 100.0%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 48.0 5.48e-01 70.7% 74.3%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 46.0 5.88e-01 70.7% 94.5%
4627221 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.80 45.0 5.32e-01 70.7% 80.0%
4668201 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.79 44.0 5.72e-01 70.7% 100.0%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.77 42.0 5.55e-01 81.5% 100.0%
4009688 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.73 44.0 5.14e-01 73.9% 86.2%
4930861 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 46.0 5.31e-01 73.9% 92.3%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.71 46.0 5.39e-01 73.9% 93.8%
3707929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 3.94e-01 72.8% 51.9%
3710893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.21e-01 72.8% 63.8%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.64e-01 73.9% 87.7%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 49.0 4.21e-01 79.3% 62.3%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.21e-01 83.7% 100.0%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 48.0 5.13e-01 83.7% 92.5%
3890091 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.60 43.0 4.61e-01 76.1% 92.5%
4962256 101.1.2.937 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25943 0.59 42.0 4.01e-01 73.9% 85.5%
3706361 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 3.77e-01 73.9% 92.0%
5040125 2003.1.5.71 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.57 40.0 2.76e-01 72.8% 26.1%
3701349 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.05e-01 92.4% 84.3%
4426077 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.56 39.0 3.33e-01 73.9% 91.0%
3990705 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 40.0 3.31e-01 78.3% 93.9%
4364087 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.55 34.0 3.15e-01 78.3% 48.7%
3384583 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.54 43.0 2.86e-01 89.1% 37.8%
5049591 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 36.0 4.07e-01 78.3% 98.5%
4576823 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.53 45.0 3.88e-01 93.5% 96.0%
3606433 5.1.4.242 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.53 44.0 2.89e-01 91.3% 46.3%
3977419 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.52 32.0 3.16e-01 78.3% 56.0%
3479226 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 35.0 3.47e-01 70.7% 95.0%
3801783 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 3.03e-01 89.1% 44.4%
863 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.51 36.0 3.53e-01 75.0% 93.2%