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NC_023610.1__YP_009010094.1__CF95_gp041__00041
Bact-VirNC_023610.1__YP_009010094.1__CF95_gp041__00041
Identity
- Accession:
- NC_023610 ↗
- Kingdom:
- phage
Quality
65.3
mean pLDDT
Taxonomy
TaxID: 1401669
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-98
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.81 | 61.0 | 5.93e-01 | 80.0% | 83.3% |
| 1y02A01 | 1.10.720.140 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.76 | 54.0 | 4.66e-01 | 88.0% | 48.7% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.71 | 64.0 | 5.11e-01 | 100.0% | 91.5% |
| 2apoB00 | 2.20.28.40 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 | 0.66 | 34.0 | 3.29e-01 | 82.0% | 43.6% |
| 1z1nX02 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.59 | 40.0 | 3.08e-01 | 76.0% | 29.9% |
| 2y43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 43.0 | 3.63e-01 | 80.0% | 45.5% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 40.0 | 4.21e-01 | 78.0% | 83.7% |
| 3aslA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 39.0 | 3.55e-01 | 72.0% | 57.4% |
| 4pfyA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.53 | 34.0 | 2.51e-01 | 94.0% | 22.4% |
| 3sluA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 2.90e-01 | 86.0% | 31.4% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.51 | 39.0 | 2.70e-01 | 86.0% | 33.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1002459 | 378.1.1.13 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 | 0.85 | 60.0 | 5.98e-01 | 74.0% | 84.6% |
| 3430765 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.81 | 67.0 | 5.18e-01 | 88.0% | 44.0% |
| 3380766 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.78 | 69.0 | 5.29e-01 | 94.0% | 81.0% |
| 3326051 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.77 | 68.0 | 5.32e-01 | 94.0% | 84.2% |
| 4929415 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.76 | 59.0 | 5.52e-01 | 82.0% | 68.3% |
| 5016275 | 377.1.1.7 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR | 0.76 | 49.0 | 5.76e-01 | 70.0% | 97.1% |
| 5021070 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.76 | 49.0 | 5.65e-01 | 72.0% | 97.1% |
| 3438467 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.75 | 66.0 | 5.29e-01 | 94.0% | 92.2% |
| 3433304 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 62.0 | 4.80e-01 | 92.0% | 42.9% |
| 3683169 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.75 | 65.0 | 5.07e-01 | 94.0% | 82.0% |
| 3397474 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 56.0 | 6.19e-01 | 80.0% | 100.0% |
| 3830263 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 49.0 | 4.96e-01 | 70.0% | 72.0% |
| 3794167 | 376.1.3.30 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C6_DPF | 0.73 | 52.0 | 4.12e-01 | 80.0% | 38.4% |
| 3634446 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.73 | 50.0 | 5.27e-01 | 78.0% | 80.0% |
| 3859342 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 51.0 | 4.78e-01 | 74.0% | 61.7% |
| 4957868 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 47.0 | 5.50e-01 | 74.0% | 97.1% |
| 3242121 | 355.1.1.2 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI | 0.71 | 36.0 | 3.61e-01 | 70.0% | 44.0% |
| 3723227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.71 | 63.0 | 5.35e-01 | 98.0% | 100.0% |
| 3405783 | 376.1.3.30 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C6_DPF | 0.70 | 50.0 | 3.90e-01 | 80.0% | 36.2% |
| 3267870 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.69 | 54.0 | 5.09e-01 | 84.0% | 75.9% |
| 3636589 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 60.0 | 4.93e-01 | 100.0% | 91.1% |
| 3928956 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 50.0 | 4.85e-01 | 78.0% | 74.5% |
| 5050300 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 45.0 | 5.19e-01 | 72.0% | 100.0% |
| 3809619 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 49.0 | 4.78e-01 | 82.0% | 72.7% |
| 4442858 | 931.1.1.15 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 | 0.66 | 43.0 | 4.88e-01 | 70.0% | 97.1% |
| 3520755 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.64 | 44.0 | 4.01e-01 | 72.0% | 55.4% |
| 4990542 | 377.1.1.128 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 | 0.62 | 46.0 | 4.78e-01 | 94.0% | 93.3% |
| 4394681 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.57 | 48.0 | 3.17e-01 | 94.0% | 95.6% |
D2
medium
residues 99-152
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gviA03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.73 | 45.0 | 5.45e-01 | 75.9% | 100.0% |
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.70 | 59.0 | 5.91e-01 | 92.6% | 90.7% |
| 2luyA01 | 3.30.60.210 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain | 0.69 | 50.0 | 4.97e-01 | 77.8% | 93.0% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 52.0 | 3.99e-01 | 87.0% | 43.1% |
| 3klkA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.64 | 45.0 | 3.20e-01 | 74.1% | 64.6% |
| 4pqdA00 | 3.90.570.10 | Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain | 0.61 | 43.0 | 3.46e-01 | 74.1% | 44.8% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 47.0 | 3.28e-01 | 94.4% | 46.6% |
| 5xfoA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 39.0 | 3.89e-01 | 70.4% | 71.4% |
| 1bkbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 39.0 | 3.71e-01 | 74.1% | 90.8% |
| 6yllA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 39.0 | 3.53e-01 | 79.6% | 98.8% |
| 2g7cB01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.54 | 34.0 | 3.23e-01 | 72.2% | 50.0% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.54 | 41.0 | 3.16e-01 | 85.2% | 47.1% |
| 7wrgB01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.54 | 39.0 | 2.46e-01 | 79.6% | 91.6% |
| 1v73A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.53 | 36.0 | 2.27e-01 | 92.6% | 11.8% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.52 | 39.0 | 2.77e-01 | 85.2% | 64.3% |
| 2xocA01 | 3.30.40.140 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.51 | 43.0 | 3.86e-01 | 94.4% | 94.9% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 3.32e-01 | 83.3% | 82.4% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 39.0 | 3.93e-01 | 88.9% | 82.5% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 38.0 | 3.71e-01 | 88.9% | 81.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3489181 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.69 | 52.0 | 4.75e-01 | 85.2% | 62.9% |
| 3938951 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 51.0 | 4.83e-01 | 88.9% | 67.7% |
| 3342185 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.67 | 47.0 | 3.91e-01 | 81.5% | 42.1% |
| 3888500 | 358.1.1.3 ↗ | a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR_2 | 0.67 | 50.0 | 3.96e-01 | 81.5% | 67.8% |
| 3917914 | 358.1.1.3 ↗ | a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR_2 | 0.66 | 50.0 | 4.15e-01 | 83.3% | 85.0% |
| 3822811 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 54.0 | 4.54e-01 | 92.6% | 63.3% |
| 3235494 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.64 | 49.0 | 4.95e-01 | 83.3% | 83.6% |
| 3769720 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.62 | 49.0 | 4.94e-01 | 85.2% | 85.5% |
| 3217762 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 47.0 | 4.74e-01 | 96.3% | 81.5% |
| 3598893 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 48.0 | 4.62e-01 | 83.3% | 80.0% |
| 3354326 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.56 | 40.0 | 3.98e-01 | 100.0% | 71.7% |
| 3362766 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.55 | 39.0 | 4.04e-01 | 100.0% | 86.0% |
| 4388054 | 4087.1.1.1 ↗ | beta barrels › NifT/FixU › NifT/FixU › NifT/FixU › NifT | 0.55 | 43.0 | 4.05e-01 | 88.9% | 94.3% |
| 3589621 | 109.2.1.26 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_92 | 0.54 | 43.0 | 2.66e-01 | 94.4% | 29.8% |
| 317607 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.53 | 44.0 | 2.72e-01 | 94.4% | 90.8% |
| 134360 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.53 | 37.0 | 3.52e-01 | 74.1% | 60.9% |
| 3521805 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.53 | 36.0 | 3.35e-01 | 79.6% | 53.3% |
| 4136157 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.52 | 38.0 | 3.62e-01 | 83.3% | 84.3% |
| 3790093 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 40.0 | 2.35e-01 | 88.9% | 14.1% |
| 3789788 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.51 | 39.0 | 2.42e-01 | 88.9% | 18.0% |
| 3927170 | 11.1.1.450 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM132 | 0.51 | 35.0 | 2.80e-01 | 74.1% | 70.0% |
| 4992873 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 38.0 | 3.72e-01 | 81.5% | 79.3% |
| 3487989 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 42.0 | 3.45e-01 | 100.0% | 62.7% |