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NC_023688.1__YP_009011462.1__CL89_gp033__00033

Bact-Vir

NC_023688.1__YP_009011462.1__CL89_gp033__00033

Identity

Accession:
NC_023688 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Angelvirus› Aeromonas_phage_PX29

TaxID: 926067

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 5.01e-01 100.0% 90.0%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.60 46.0 4.19e-01 84.2% 69.2%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.60 44.0 3.23e-01 80.7% 77.1%
4rnyA03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.60 42.0 3.31e-01 75.4% 53.9%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 3.98e-01 100.0% 66.4%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 39.0 3.81e-01 80.7% 62.9%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.57 44.0 3.99e-01 86.0% 63.7%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.15e-01 96.5% 75.3%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 45.0 3.26e-01 100.0% 42.5%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.79e-01 96.5% 66.7%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.83e-01 96.5% 77.0%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.09e-01 84.2% 82.7%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 4.10e-01 100.0% 83.5%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.77e-01 98.2% 77.8%
3qikA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 40.0 3.64e-01 84.2% 77.4%
1n99A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 40.0 3.60e-01 82.5% 73.2%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.53 44.0 3.81e-01 100.0% 75.2%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 42.0 2.98e-01 89.5% 77.7%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.53 43.0 4.05e-01 100.0% 91.9%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 39.0 3.03e-01 84.2% 75.3%
2eaqA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 40.0 3.55e-01 86.0% 68.5%
2e7kA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 39.0 3.44e-01 84.2% 64.8%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 43.0 3.08e-01 96.5% 42.5%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 45.0 4.10e-01 100.0% 87.0%
1vq8E02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 38.0 3.33e-01 84.2% 90.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281801 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.69 60.0 4.00e-01 96.5% 67.7%
3843929 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.59 53.0 3.66e-01 100.0% 67.4%
5045329 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.58 43.0 3.49e-01 80.7% 85.2%
4989880 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.57 42.0 3.30e-01 82.5% 79.3%
3472562 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 48.0 3.95e-01 100.0% 77.3%
4949985 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.89e-01 86.0% 78.8%
3934156 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.77e-01 96.5% 76.5%
3906073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.90e-01 98.2% 76.2%
5039029 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 39.0 3.40e-01 75.4% 76.7%
4638994 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 46.0 3.76e-01 96.5% 89.6%
3242022 220.1.1.68 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.55 47.0 3.58e-01 100.0% 63.4%
3710933 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.54 39.0 3.21e-01 80.7% 41.9%
1031144 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.54 43.0 3.77e-01 91.2% 74.7%
2100847 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.77e-01 96.5% 68.6%
3981607 3816.1.1.1 ↗ beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD 0.54 43.0 3.94e-01 93.0% 92.5%
3596568 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 46.0 3.27e-01 100.0% 72.8%
3470361 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.54 39.0 3.43e-01 82.5% 64.2%
5060431 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.53 43.0 2.67e-01 94.7% 17.1%
3870788 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.53 40.0 3.32e-01 84.2% 59.1%
3204055 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.53 39.0 3.80e-01 82.5% 72.3%
4082107 7089.1.1.3 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD 0.52 38.0 3.60e-01 82.5% 64.3%
4056826 3816.1.1.1 ↗ beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD 0.52 43.0 3.88e-01 93.0% 87.5%
4370025 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 39.0 3.33e-01 86.0% 88.6%
3942738 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.52 38.0 2.88e-01 80.7% 85.8%
4504670 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.51 40.0 3.80e-01 87.7% 71.4%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 36.0 3.76e-01 75.4% 86.0%
4846211 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 45.0 3.14e-01 100.0% 64.4%
D2 high residues 78-120
PDB
Domain cluster: rep: OP870147.1__WBF80781.1__F31_0114__00114__D22-68
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01228.27 best Gly_radical 34.0 4.80e-08 67.4% 26.4%