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NC_023688.1__YP_009011703.1__CL89_gp204__00274

Bact-Vir

NC_023688.1__YP_009011703.1__CL89_gp204__00274

Identity

Accession:
NC_023688 ↗
Kingdom:
phage

Quality

63.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Angelvirus› Aeromonas_phage_PX29

TaxID: 926067

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-94
PDB
Domain cluster: rep: OR525698.1__WQN06384.1__X__00056__D8-103
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.70 56.0 5.67e-01 100.0% 86.0%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 55.0 5.63e-01 100.0% 89.2%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 54.0 5.52e-01 100.0% 88.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 38.0 4.67e-01 94.2% 95.8%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 50.0 5.31e-01 91.9% 90.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.77e-01 98.8% 83.3%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 39.0 4.62e-01 95.3% 87.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.78e-01 100.0% 83.8%
3mhxB00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 54.0 5.54e-01 100.0% 93.8%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.53e-01 95.3% 78.2%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.92e-01 100.0% 92.5%
3nlcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 3.44e-01 87.2% 82.3%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 3.64e-01 89.5% 49.3%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 49.0 4.49e-01 93.0% 96.4%
5jciA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 4.31e-01 96.5% 100.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 4.29e-01 97.7% 96.2%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 4.24e-01 97.7% 98.4%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 42.0 3.28e-01 84.9% 57.8%
3ef6A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 4.16e-01 94.2% 100.0%
5jriA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 4.28e-01 95.3% 100.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.94e-01 97.7% 91.3%
1w27A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.54 44.0 3.37e-01 95.3% 53.2%
3fg2P02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 4.08e-01 97.7% 100.0%
3vkgA03 3.20.180.20 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 0.53 36.0 3.49e-01 96.5% 61.0%
2xveA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 4.25e-01 93.0% 100.0%
4ntdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 4.11e-01 95.3% 91.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5063688 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.73 58.0 5.78e-01 100.0% 82.0%
4947702 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 6.09e-01 98.8% 98.7%
3756676 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.71 54.0 5.17e-01 100.0% 70.0%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 56.0 5.97e-01 98.8% 97.3%
3569289 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.71 55.0 5.73e-01 100.0% 90.0%
3486496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 44.0 5.36e-01 97.7% 100.0%
2499543 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 56.0 5.76e-01 98.8% 91.3%
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.70 55.0 5.80e-01 100.0% 96.0%
3556321 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.70 55.0 5.71e-01 100.0% 91.3%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.70 44.0 4.98e-01 100.0% 84.6%
5065570 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 57.0 5.77e-01 100.0% 89.4%
3368254 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.69 44.0 5.26e-01 97.7% 100.0%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 46.0 4.87e-01 100.0% 77.3%
4951199 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 56.0 5.92e-01 100.0% 98.7%
4333277 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.69 53.0 5.28e-01 100.0% 78.9%
5078626 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 55.0 5.80e-01 100.0% 100.0%
4957418 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 54.0 5.79e-01 100.0% 97.3%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 5.11e-01 96.5% 87.1%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.68 46.0 5.12e-01 100.0% 89.4%
1174965 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 54.0 5.72e-01 100.0% 96.1%
1031172 4.1.1.113 ↗ beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.67 47.0 5.08e-01 100.0% 87.5%
4213135 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.67 49.0 4.36e-01 100.0% 54.0%
3475240 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.67 42.0 5.06e-01 95.3% 100.0%
4033110 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 53.0 5.62e-01 100.0% 100.0%
3303889 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 44.0 4.68e-01 100.0% 78.7%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 58.0 5.84e-01 100.0% 96.5%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 46.0 4.83e-01 100.0% 84.0%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.65 45.0 4.80e-01 100.0% 82.7%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 50.0 5.33e-01 100.0% 96.0%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.65 40.0 4.29e-01 95.3% 72.0%
3596265 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.91e-01 100.0% 77.0%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.63 41.0 4.32e-01 97.7% 74.7%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.63 42.0 4.41e-01 100.0% 77.3%
3423337 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.63 44.0 4.52e-01 100.0% 77.5%
3301383 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.63 37.0 4.53e-01 91.9% 100.0%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.60e-01 100.0% 85.7%
3824346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.55e-01 100.0% 78.8%
3407824 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.62 47.0 4.47e-01 80.2% 92.0%
2726588 4.1.1.317 ↗ beta barrels › SH3 › SH3 › SH3 › Fe_dep_repress 0.61 50.0 4.96e-01 100.0% 87.9%
3539094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.39e-01 95.3% 83.7%
3401711 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.58 45.0 3.78e-01 83.7% 68.7%
3883895 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 42.0 4.03e-01 94.2% 66.0%
3699975 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.58 39.0 2.39e-01 96.5% 10.8%
3464303 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.57 51.0 4.24e-01 100.0% 86.5%
1563361 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.57 45.0 3.09e-01 86.0% 78.9%
1759163 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 49.0 4.42e-01 95.3% 94.8%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 52.0 4.58e-01 100.0% 95.0%
3181649 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 47.0 4.01e-01 97.7% 89.3%
4964081 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 46.0 4.21e-01 96.5% 93.0%
3022070 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 48.0 4.38e-01 100.0% 75.4%
4565714 10.12.1.12 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.53 44.0 3.17e-01 93.0% 55.8%
3514479 210.1.2.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.52 40.0 3.75e-01 83.7% 73.4%
D2 high residues 116-173
PDB