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NC_023690.1__YP_009012061.1__CM09_gp162__00162

Bact-Vir

Identity

Accession:: NC_023690 ↗
Kingdom:: phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Omegavirus› Mycobacterium_phage_Courthouse

TaxID: 2923000

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 133-188

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8d3mA02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.79	54.0	3.47e-01	94.6%	16.7%
2p1aB01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.72	52.0	3.84e-01	76.8%	30.8%
5xgbA03	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.54	48.0	3.06e-01	96.4%	36.9%
2wtmA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.53	40.0	2.66e-01	85.7%	56.8%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3787064	7534.1.1.0 ↗	a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase	0.85	60.0	3.62e-01	73.2%	14.8%
4927388	2005.1.1.3 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp	0.81	59.0	4.09e-01	98.2%	26.1%
3176201	3567.1.1.159 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF29918	0.78	57.0	3.74e-01	87.5%	20.5%
3494950	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.74	61.0	5.44e-01	91.1%	67.5%
3219796	5001.1.1.106 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str	0.67	61.0	3.69e-01	98.2%	49.2%
3451928	109.4.1.162 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192	0.67	62.0	3.30e-01	100.0%	45.3%
3244388	5001.1.1.106 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str	0.66	60.0	3.59e-01	96.4%	48.4%
4025011	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.66	48.0	3.79e-01	78.6%	36.7%
3238272	5001.1.1.106 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str	0.66	58.0	3.57e-01	98.2%	49.8%
3221205	5001.1.1.106 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str	0.66	60.0	3.66e-01	100.0%	21.5%
3244252	5001.1.1.106 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str	0.65	60.0	3.65e-01	100.0%	22.5%
3214589	5001.1.1.106 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str	0.65	59.0	3.63e-01	100.0%	22.1%
3825947	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.65	44.0	4.34e-01	75.0%	66.7%
3449773	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.64	44.0	2.75e-01	71.4%	21.2%
3278773	7579.1.1.23 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II	0.56	43.0	2.63e-01	82.1%	13.9%
3245774	7525.1.1.2 ↗	a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2	0.52	43.0	2.61e-01	94.6%	55.3%

D2 medium residues 47-132

PDB

Domain cluster: rep: MT701595.1__QPB09713.1__CPT_Shaeky_026__00026__D24-87

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13392.13 best	HNH_3	58.3	6.10e-16	53.5%	93.5%