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NC_023690.1__YP_009012133.1__CM09_gp188__00234
Bact-VirNC_023690.1__YP_009012133.1__CM09_gp188__00234
Identity
- Accession:
- NC_023690 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
TaxID: 2923000
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-102
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.70 | 37.0 | 3.65e-01 | 75.0% | 48.6% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.64 | 36.0 | 3.54e-01 | 75.0% | 49.5% |
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.63 | 22.0 | 2.99e-01 | 93.0% | 56.6% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 29.0 | 3.32e-01 | 76.0% | 61.1% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 27.0 | 2.97e-01 | 100.0% | 50.6% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 22.0 | 2.58e-01 | 93.0% | 43.8% |
| 2lioA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 35.0 | 3.16e-01 | 100.0% | 45.6% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 37.0 | 3.59e-01 | 72.0% | 88.4% |
| 1qftB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 38.0 | 3.25e-01 | 78.0% | 56.2% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 32.0 | 3.17e-01 | 79.0% | 58.7% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.51 | 37.0 | 4.07e-01 | 77.0% | 96.2% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.51 | 34.0 | 3.80e-01 | 78.0% | 88.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4143716 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.68 | 38.0 | 3.74e-01 | 75.0% | 50.0% |
| 2323821 | 4212.2.1.0 ↗ | beta barrels › FimD N-terminal domain-like | 0.65 | 46.0 | 4.60e-01 | 100.0% | 71.8% |
| 4937917 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 22.0 | 3.09e-01 | 93.0% | 58.0% |
| 4515677 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.63 | 36.0 | 3.48e-01 | 75.0% | 48.2% |
| 4009148 | 292.2.1.14 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › SWIM | 0.61 | 34.0 | 3.56e-01 | 100.0% | 60.0% |
| 2323952 | 4.29.1.1 ↗ | beta barrels › SH3 › Pyrrolysyl-tRNA synthetase tRNA binding domain › Pyrrolysyl-tRNA synthetase tRNA binding domain › PF31240 | 0.60 | 33.0 | 3.60e-01 | 100.0% | 62.8% |
| 3593992 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 38.0 | 4.08e-01 | 98.0% | 77.6% |
| 5040690 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.58 | 31.0 | 3.26e-01 | 81.0% | 54.7% |
| 3483435 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 38.0 | 3.13e-01 | 94.0% | 36.7% |
| 144577 | 331.3.1.22 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START_2 | 0.57 | 35.0 | 3.23e-01 | 100.0% | 48.4% |
| 3965099 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.56 | 33.0 | 3.28e-01 | 75.0% | 52.4% |
| 4157284 | 9.7.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh | 0.54 | 40.0 | 4.02e-01 | 78.0% | 77.1% |
| 4998989 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.54 | 37.0 | 2.79e-01 | 71.0% | 78.9% |
| 4982571 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.51 | 30.0 | 3.82e-01 | 80.0% | 100.0% |
| 4950522 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.51 | 27.0 | 3.26e-01 | 72.0% | 85.5% |
| 3967996 | 223.1.1.76 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_7 | 0.50 | 36.0 | 3.49e-01 | 77.0% | 66.1% |
| 1031172 | 4.1.1.113 ↗ | beta barrels › SH3 › SH3 › SH3 › TraI_2B | 0.50 | 32.0 | 3.60e-01 | 80.0% | 88.9% |