←Back to structures
NC_023691.1__YP_009012162.1__CL65_gp023__00023
Bact-VirNC_023691.1__YP_009012162.1__CL65_gp023__00023
Identity
- Accession:
- NC_023691 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Taxonomy
TaxID: 1074308
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-99_191-226
Domain cluster:
rep: KJ803031.1__AID16847.1__vBDshPR2C_32__00032__D58-159
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.57 | 51.0 | 5.27e-01 | 96.9% | 100.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4602455 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.67 | 38.0 | 5.00e-01 | 86.7% | 100.0% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.66 | 36.0 | 4.89e-01 | 93.8% | 100.0% |
| 5025023 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.65 | 38.0 | 4.88e-01 | 88.3% | 98.7% |
| 3970970 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.64 | 38.0 | 4.84e-01 | 96.9% | 100.0% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.63 | 37.0 | 4.81e-01 | 91.4% | 100.0% |
D2
high
residues 103-185
Domain cluster:
rep: MW073100.1__QWT28899.1__vBMoxSR1_gp49__00049__D318-402
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vw4700 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.66 | 44.0 | 4.10e-01 | 92.8% | 53.8% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.65 | 40.0 | 2.42e-01 | 86.7% | 10.0% |
| 5jxsA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.64 | 57.0 | 4.79e-01 | 100.0% | 63.4% |
| 1ra6A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.64 | 57.0 | 5.25e-01 | 100.0% | 84.9% |
| 6qwtA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.62 | 55.0 | 4.67e-01 | 100.0% | 63.1% |
| 3h5xA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.62 | 55.0 | 4.97e-01 | 100.0% | 77.6% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 48.0 | 5.14e-01 | 100.0% | 98.6% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 37.0 | 3.90e-01 | 80.7% | 66.7% |
| 4erdA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 51.0 | 4.66e-01 | 100.0% | 71.3% |
| 2ckwA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.60 | 53.0 | 4.77e-01 | 100.0% | 80.2% |
| 1wqsA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 35.0 | 3.72e-01 | 100.0% | 68.6% |
| 5edxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 50.0 | 4.56e-01 | 100.0% | 81.6% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 46.0 | 4.76e-01 | 100.0% | 91.3% |
| 1s48A04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 47.0 | 4.27e-01 | 100.0% | 65.8% |
| 3omzA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 49.0 | 4.66e-01 | 100.0% | 87.4% |
| 2jllA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 44.0 | 4.31e-01 | 100.0% | 76.8% |
| 5i2cB01 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.56 | 42.0 | 3.55e-01 | 100.0% | 45.9% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 47.0 | 4.56e-01 | 100.0% | 84.0% |
| 7sjlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 4.27e-01 | 100.0% | 81.5% |
| 2o14A01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.54 | 39.0 | 3.32e-01 | 100.0% | 43.9% |
| 3ndzE00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 41.0 | 3.75e-01 | 100.0% | 62.6% |
| 3f6oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 31.0 | 3.04e-01 | 79.5% | 51.6% |
| 4igbB02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 47.0 | 3.96e-01 | 100.0% | 58.7% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 4.24e-01 | 100.0% | 79.6% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.53 | 46.0 | 4.48e-01 | 100.0% | 87.2% |
| 2y23A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 4.05e-01 | 100.0% | 76.0% |
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 35.0 | 2.77e-01 | 73.5% | 56.4% |
| 1xviA02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.50 | 41.0 | 4.00e-01 | 91.6% | 88.3% |
| 3d3aA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 43.0 | 3.78e-01 | 100.0% | 73.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3759359 | 3019.1.1.0 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain | 0.84 | 79.0 | 7.07e-01 | 100.0% | 90.9% |
| 3759364 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.80 | 73.0 | 6.76e-01 | 100.0% | 99.0% |
| 3166067 | 3019.1.1.7 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_domII | 0.69 | 61.0 | 5.70e-01 | 100.0% | 94.3% |
| 4379152 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.67 | 53.0 | 5.44e-01 | 100.0% | 88.7% |
| 3838499 | 1110.1.1.1 ↗ | beta sandwiches › Flagellar hook subunit protein FlgE beta sandwich domain › Flagellar hook subunit protein FlgE beta sandwich domain › Flagellar hook subunit protein FlgE beta sandwich domain › Flagellin_IN | 0.65 | 57.0 | 5.10e-01 | 100.0% | 95.8% |
| 2541763 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.63 | 56.0 | 3.62e-01 | 100.0% | 38.9% |
| 3706636 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.62 | 34.0 | 3.55e-01 | 78.3% | 55.0% |
| 3866570 | 327.11.2.61 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_2 | 0.61 | 42.0 | 4.75e-01 | 92.8% | 98.3% |
| 5038823 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.59 | 44.0 | 4.58e-01 | 90.4% | 86.7% |
| 2122949 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.57 | 43.0 | 3.10e-01 | 91.6% | 27.5% |
| 4928347 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.57 | 51.0 | 4.00e-01 | 100.0% | 54.5% |
| 4947101 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.57 | 51.0 | 4.92e-01 | 100.0% | 98.9% |
| 4179416 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.56 | 41.0 | 3.78e-01 | 79.5% | 97.4% |
| 3596028 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.56 | 31.0 | 3.17e-01 | 80.7% | 52.5% |
| 4810251 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.56 | 50.0 | 3.52e-01 | 100.0% | 77.8% |
| 4575751 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.56 | 34.0 | 3.41e-01 | 84.3% | 56.7% |
| 5077501 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.55 | 48.0 | 4.80e-01 | 100.0% | 95.3% |
| 4122798 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.54 | 34.0 | 3.23e-01 | 86.7% | 50.5% |
| 5013026 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.54 | 36.0 | 2.91e-01 | 97.6% | 33.5% |
| 4090279 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.54 | 47.0 | 4.75e-01 | 100.0% | 98.8% |
| 3464857 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.53 | 43.0 | 4.11e-01 | 100.0% | 75.8% |
| 1201976 | 230.4.1.1 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE | 0.53 | 37.0 | 2.87e-01 | 74.7% | 58.1% |
| 5054625 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.52 | 43.0 | 4.43e-01 | 92.8% | 97.5% |
| 3232360 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 34.0 | 3.33e-01 | 85.5% | 60.0% |
| 4945853 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.52 | 43.0 | 4.45e-01 | 94.0% | 97.5% |
| 4948745 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.51 | 44.0 | 3.14e-01 | 96.4% | 41.5% |
| 3481360 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.51 | 35.0 | 2.96e-01 | 89.2% | 38.7% |
| 3302107 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.51 | 43.0 | 3.39e-01 | 94.0% | 52.8% |
| 3782093 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.51 | 40.0 | 4.05e-01 | 89.2% | 85.9% |
| 4949459 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.51 | 42.0 | 4.31e-01 | 94.0% | 95.0% |
| 3586847 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.51 | 34.0 | 3.48e-01 | 81.9% | 71.2% |
| 5032337 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 34.0 | 3.50e-01 | 98.8% | 72.5% |
| 4929896 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.51 | 42.0 | 4.31e-01 | 92.8% | 96.2% |
| 5037005 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.50 | 41.0 | 4.22e-01 | 94.0% | 95.0% |
| 5051462 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.50 | 29.0 | 2.97e-01 | 81.9% | 56.2% |