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NC_023691.1__YP_009012193.2__CL65_gp054__00054

Bact-Vir

NC_023691.1__YP_009012193.2__CL65_gp054__00054

Identity

Accession:
NC_023691 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Patiencevirus› Mycobacterium_phage_Patience

TaxID: 1074308

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-84
PDB
Domain cluster: rep: OR521059.1__WNO25998.1__SEA_ASEGATO_106__00103__D3-68
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.75 45.0 5.13e-01 78.3% 81.7%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.72 46.0 4.92e-01 91.6% 74.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 58.0 4.79e-01 94.0% 62.1%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 5.17e-01 88.0% 93.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.95e-01 88.0% 89.4%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.82e-01 86.7% 77.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.83e-01 86.7% 90.3%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 5.01e-01 88.0% 95.2%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 56.0 4.57e-01 94.0% 59.6%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 55.0 3.98e-01 94.0% 37.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.75e-01 88.0% 93.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.63 43.0 4.88e-01 78.3% 93.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.99e-01 91.6% 93.1%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.59 46.0 4.81e-01 81.9% 97.3%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 36.0 3.96e-01 73.5% 78.1%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 37.0 4.18e-01 79.5% 92.9%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 36.0 4.20e-01 74.7% 98.1%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 41.0 4.31e-01 84.3% 82.7%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 48.0 3.97e-01 91.6% 52.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.52e-01 88.0% 95.8%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 35.0 3.99e-01 77.1% 91.5%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 44.0 4.57e-01 89.2% 91.1%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 32.0 3.75e-01 71.1% 96.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 46.0 4.29e-01 100.0% 86.2%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 47.0 3.02e-01 100.0% 85.1%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.51e-01 84.3% 79.9%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.52 39.0 3.93e-01 88.0% 80.7%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.36e-01 89.2% 71.5%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.52 40.0 4.20e-01 91.6% 90.8%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.31e-01 72.3% 100.0%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 38.0 2.75e-01 84.3% 46.8%
5hx0A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 42.0 2.80e-01 94.0% 91.8%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 43.0 3.90e-01 94.0% 87.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 47.0 5.26e-01 88.0% 90.8%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 46.0 5.14e-01 89.2% 89.2%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 47.0 5.20e-01 88.0% 90.8%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 47.0 5.18e-01 88.0% 90.8%
3683487 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.67 58.0 4.53e-01 94.0% 49.1%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 45.0 5.00e-01 88.0% 87.7%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 46.0 5.14e-01 88.0% 90.8%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 46.0 5.13e-01 88.0% 90.8%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 45.0 5.05e-01 88.0% 89.2%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 46.0 5.07e-01 88.0% 90.8%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 46.0 5.05e-01 88.0% 90.8%
3422227 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.66 57.0 3.82e-01 94.0% 29.7%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 45.0 5.02e-01 88.0% 90.8%
3950208 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 45.0 4.98e-01 88.0% 90.8%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 45.0 4.95e-01 88.0% 89.4%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 44.0 4.90e-01 88.0% 89.2%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 45.0 4.96e-01 88.0% 90.8%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 45.0 4.95e-01 88.0% 90.8%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 45.0 5.00e-01 89.2% 92.3%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 49.0 5.00e-01 78.3% 96.2%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.98e-01 89.2% 92.3%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 45.0 4.96e-01 88.0% 92.3%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 45.0 4.93e-01 89.2% 92.3%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 44.0 4.86e-01 88.0% 90.8%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 44.0 4.83e-01 88.0% 90.8%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 45.0 4.89e-01 89.2% 93.8%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 45.0 4.95e-01 89.2% 93.8%
4646632 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 44.0 4.82e-01 89.2% 92.3%
3583921 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 45.0 4.86e-01 73.5% 98.6%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.33e-01 90.4% 95.9%
3444064 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 52.0 4.02e-01 94.0% 47.2%
2138090 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 43.0 4.72e-01 89.2% 92.3%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 42.0 4.58e-01 88.0% 90.8%
3631731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.04e-01 89.2% 63.3%
3174822 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.60 47.0 4.79e-01 83.1% 91.3%
3846130 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.59 48.0 3.65e-01 89.2% 50.7%
3801650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.70e-01 90.4% 81.1%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.78e-01 94.0% 91.1%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.41e-01 89.2% 85.7%
3415831 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.59 49.0 4.33e-01 91.6% 89.2%
3276317 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 46.0 2.88e-01 84.3% 26.3%
3430260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 45.0 2.97e-01 86.7% 38.5%
5024232 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.56 46.0 4.44e-01 95.2% 80.0%
3174446 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 47.0 3.03e-01 92.8% 30.9%
3550168 4.8.1.27 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N 0.54 41.0 4.09e-01 85.5% 95.6%
3687023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.29e-01 94.0% 93.0%
3593976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.88e-01 92.8% 59.2%
4877991 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 46.0 4.30e-01 100.0% 83.7%
3223474 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.52 44.0 2.89e-01 92.8% 25.4%
4003553 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.52 44.0 2.77e-01 92.8% 21.1%
3599572 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 38.0 2.53e-01 83.1% 33.7%
3578603 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 35.0 3.65e-01 96.4% 75.0%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 45.0 3.95e-01 98.8% 92.0%
3193522 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 39.0 2.81e-01 86.7% 91.5%