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NC_023691.1__YP_009012228.2__CL65_gp109__00089

Bact-Vir

NC_023691.1__YP_009012228.2__CL65_gp109__00089

Identity

Accession:
NC_023691 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Patiencevirus› Mycobacterium_phage_Patience

TaxID: 1074308

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-95
PDB
Domain cluster: rep: NC_011039.1__YP_002003432.1__PREDATR_74__00074__D13-101
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.04e-01 100.0% 59.3%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.65 56.0 4.22e-01 95.8% 49.4%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 48.0 3.96e-01 80.3% 77.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 5.13e-01 98.6% 93.5%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 49.0 3.47e-01 83.1% 46.9%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 46.0 3.87e-01 80.3% 72.1%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.61 45.0 4.55e-01 85.9% 79.7%
2kqfA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 48.0 4.38e-01 87.3% 84.4%
7csoA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.73e-01 85.9% 49.6%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 32.0 3.52e-01 85.9% 68.4%
2jr1A01 3.30.160.510 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS 0.56 37.0 3.89e-01 71.8% 76.6%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 41.0 3.61e-01 78.9% 52.8%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 43.0 4.12e-01 88.7% 97.7%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 43.0 3.39e-01 83.1% 87.0%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 45.0 3.58e-01 94.4% 54.0%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.43e-01 80.3% 74.0%
2z17A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 42.0 3.93e-01 87.3% 85.1%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 38.0 2.73e-01 74.6% 31.9%
7jptA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 46.0 3.78e-01 100.0% 74.6%
4rgyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 36.0 2.48e-01 70.4% 93.2%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.52 40.0 3.69e-01 90.1% 98.1%
4r62A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 38.0 3.06e-01 91.5% 38.3%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 38.0 2.98e-01 83.1% 95.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 38.0 3.37e-01 87.3% 88.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080798 4.17.1.0 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.72 61.0 6.04e-01 100.0% 89.3%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.29e-01 100.0% 84.0%
3628462 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 42.0 4.57e-01 71.8% 80.0%
3439789 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 54.0 4.13e-01 97.2% 54.9%
3254982 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.64 47.0 4.77e-01 78.9% 88.6%
3551896 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.63 46.0 4.69e-01 77.5% 82.9%
3248736 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.61 45.0 4.32e-01 77.5% 72.5%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.09e-01 100.0% 42.4%
4422325 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 55.0 5.09e-01 100.0% 85.4%
3813787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.48e-01 95.8% 95.6%
3482706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 3.99e-01 100.0% 54.7%
4347495 274.1.1.1 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pilin 0.58 47.0 3.84e-01 87.3% 84.5%
4056697 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 52.0 3.30e-01 100.0% 92.3%
3784710 5.1.5.213 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 0.58 47.0 2.86e-01 90.1% 33.8%
3331611 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 47.0 3.52e-01 91.5% 71.4%
4162584 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.57 49.0 3.88e-01 100.0% 55.6%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 46.0 4.62e-01 100.0% 88.0%
3585474 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.33e-01 100.0% 71.4%
3417018 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 48.0 3.31e-01 95.8% 52.4%
3782292 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.56 49.0 4.80e-01 100.0% 93.8%
4050042 4.1.1.441 ↗ beta barrels › SH3 › SH3 › SH3 › PF26332 0.56 49.0 4.76e-01 98.6% 95.0%
3485761 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 3.68e-01 100.0% 65.6%
3816041 2004.1.1.299 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.54 42.0 2.82e-01 84.5% 77.0%
4043361 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 45.0 2.85e-01 94.4% 51.9%
4961941 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 42.0 2.71e-01 88.7% 24.0%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.54 47.0 4.18e-01 100.0% 70.5%
3657233 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.53 37.0 2.71e-01 73.2% 36.1%
4593431 223.1.1.67 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7 0.53 40.0 2.89e-01 81.7% 88.1%
4996571 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.53 38.0 3.11e-01 77.5% 80.0%
4012035 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.52 46.0 3.15e-01 100.0% 59.6%
3986558 2484.1.1.231 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C 0.52 40.0 3.14e-01 88.7% 50.6%
4494466 2484.1.1.231 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C 0.52 40.0 2.87e-01 87.3% 41.2%
3626389 4.1.1.310 ↗ beta barrels › SH3 › SH3 › SH3 › PF26050 0.52 42.0 4.02e-01 100.0% 75.6%
3634956 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.52 38.0 2.85e-01 78.9% 53.7%
3280105 211.1.1.6 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 0.51 37.0 2.91e-01 78.9% 91.2%
2504416 1.4.1.1 ↗ beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin › Baculo_p26 0.51 37.0 3.24e-01 98.6% 48.3%
3873544 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.51 38.0 3.06e-01 78.9% 91.8%
3244174 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 41.0 3.42e-01 93.0% 88.9%
4008916 223.1.1.103 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7, PF30448 0.50 40.0 2.60e-01 88.7% 72.8%
3577548 331.12.1.0 ↗ a+b two layers › TBP-like › YugN-like › YugN-like 0.50 38.0 3.35e-01 90.1% 53.1%