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NC_023712.1__YP_009014441.1__CL96_gp078__00078

Bact-Vir

NC_023712.1__YP_009014441.1__CL96_gp078__00078

Identity

Accession:
NC_023712 ↗
Kingdom:
phage

Quality

61.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Corndogvirus› Mycobacterium_phage_Firecracker

TaxID: 2922998

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-65
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.73 55.0 3.30e-01 100.0% 12.7%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.72 57.0 4.89e-01 100.0% 54.5%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.69 60.0 4.53e-01 100.0% 53.8%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 5.32e-01 100.0% 74.1%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 52.0 4.21e-01 83.3% 44.8%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 56.0 4.21e-01 100.0% 37.2%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 57.0 4.42e-01 100.0% 49.5%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.20e-01 100.0% 87.2%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 5.20e-01 100.0% 77.4%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 57.0 4.96e-01 100.0% 72.9%
4fg9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 40.0 3.55e-01 95.8% 45.6%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.30e-01 100.0% 63.9%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.34e-01 100.0% 65.2%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.40e-01 100.0% 74.2%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.56 47.0 3.72e-01 100.0% 77.5%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.29e-01 100.0% 72.0%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 3.19e-01 100.0% 63.4%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.26e-01 100.0% 70.5%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 37.0 2.99e-01 75.0% 67.0%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.11e-01 100.0% 63.7%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.97e-01 100.0% 63.2%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 41.0 2.52e-01 100.0% 12.6%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.16e-01 100.0% 61.0%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 39.0 2.55e-01 93.8% 30.0%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 2.87e-01 85.4% 46.6%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.51 32.0 2.72e-01 79.2% 31.6%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.50 36.0 2.84e-01 83.3% 36.0%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.63e-01 100.0% 23.5%
1dpeA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 37.0 2.88e-01 100.0% 33.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264879 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.06e-01 100.0% 57.1%
3486271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 4.65e-01 100.0% 45.6%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 65.0 5.83e-01 100.0% 72.3%
3830083 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.73 60.0 4.25e-01 100.0% 31.9%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.23e-01 100.0% 64.6%
3404812 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.72 59.0 4.26e-01 100.0% 33.1%
3310577 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.70 60.0 4.79e-01 100.0% 64.0%
3931053 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.69 60.0 4.75e-01 100.0% 77.0%
2505866 1.2.1.4 ↗ beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Calici_coat, Calici_coat_C 0.69 52.0 3.75e-01 85.4% 64.9%
3824811 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.68 59.0 4.16e-01 100.0% 42.6%
3887433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 4.46e-01 100.0% 49.6%
3613205 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 56.0 3.51e-01 100.0% 21.6%
3599666 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 55.0 3.22e-01 100.0% 12.7%
4021107 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 53.0 3.45e-01 100.0% 21.7%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 53.0 4.39e-01 100.0% 57.8%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.61 54.0 4.03e-01 100.0% 52.5%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 51.0 4.32e-01 100.0% 67.1%
3415831 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.60 50.0 3.87e-01 100.0% 70.0%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 50.0 3.93e-01 100.0% 47.2%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 50.0 4.31e-01 100.0% 72.5%
4926809 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.57 48.0 3.41e-01 100.0% 73.8%
4972785 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 45.0 4.53e-01 100.0% 87.8%
4017600 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 45.0 2.79e-01 100.0% 13.8%
4940983 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.56 46.0 2.90e-01 93.8% 54.5%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.25e-01 100.0% 75.7%
3398906 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.54 36.0 3.49e-01 72.9% 60.0%
3277727 4.8.1.43 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.53 45.0 3.66e-01 100.0% 52.6%
3580035 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 2.48e-01 100.0% 12.9%
4001749 206.1.3.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.51 42.0 3.01e-01 100.0% 76.8%