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NC_023717.1__YP_009015030.1__CL97_gp068__00068

Bact-Vir

NC_023717.1__YP_009015030.1__CL97_gp068__00068

Identity

Accession:
NC_023717 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Cronobacter_phage_CR9

TaxID: 1162290

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-131
PDB
Domain cluster: rep: MG018927.1__ATW58043.1__CNR34_00110__00108__D120-200
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 33.0 3.89e-01 70.8% 72.4%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 38.0 4.30e-01 88.8% 79.1%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 4.54e-01 94.4% 82.4%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 33.0 4.36e-01 77.5% 100.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 34.0 3.92e-01 80.9% 78.7%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 35.0 3.85e-01 70.8% 71.2%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 34.0 3.77e-01 80.9% 71.8%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 32.0 3.86e-01 70.8% 83.9%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 32.0 4.15e-01 77.5% 98.0%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 30.0 3.56e-01 80.9% 74.1%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 27.0 3.30e-01 91.0% 67.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 27.0 2.53e-01 86.5% 33.3%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.57e-01 95.5% 51.6%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 26.0 3.22e-01 91.0% 69.2%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 36.0 4.10e-01 83.1% 85.1%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 38.0 3.48e-01 95.5% 50.4%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 4.33e-01 96.6% 94.5%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 33.0 3.59e-01 80.9% 71.8%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 4.26e-01 97.8% 89.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 43.0 3.87e-01 88.8% 93.8%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.84e-01 97.8% 67.0%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 26.0 3.20e-01 91.0% 72.5%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 26.0 2.95e-01 91.0% 56.2%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 3.61e-01 95.5% 53.2%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.81e-01 100.0% 78.8%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 26.0 2.92e-01 91.0% 56.2%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.95e-01 96.6% 87.5%
5jpnC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 43.0 3.58e-01 96.6% 52.9%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 43.0 3.72e-01 96.6% 59.4%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.50 32.0 3.53e-01 93.3% 82.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.68 38.0 4.10e-01 96.6% 64.0%
4028871 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 43.0 4.73e-01 94.4% 79.5%
4206920 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.65 41.0 4.42e-01 92.1% 74.7%
4594302 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 38.0 3.52e-01 82.0% 46.1%
4951344 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 38.0 3.48e-01 88.8% 45.2%
4992039 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.63 34.0 3.68e-01 82.0% 60.8%
4123140 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.63 39.0 3.63e-01 82.0% 50.9%
4366434 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 36.0 4.04e-01 83.1% 72.9%
4049072 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.62 38.0 3.59e-01 82.0% 50.0%
5055172 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.62 28.0 3.48e-01 91.0% 67.3%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 34.0 4.10e-01 71.9% 82.8%
3242941 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 43.0 4.74e-01 94.4% 91.4%
3969569 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 35.0 4.15e-01 93.3% 83.3%
4528717 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.61 38.0 4.21e-01 91.0% 79.7%
4371403 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 35.0 3.27e-01 82.0% 45.5%
4417109 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 35.0 3.37e-01 82.0% 48.6%
4079201 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 35.0 3.30e-01 88.8% 47.3%
4373021 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.61 35.0 3.46e-01 82.0% 51.5%
4955709 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 36.0 3.30e-01 80.9% 43.3%
5023276 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 44.0 4.48e-01 96.6% 80.0%
4380962 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 37.0 3.57e-01 83.1% 53.3%
4443040 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 38.0 3.59e-01 88.8% 53.8%
4052370 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 39.0 4.39e-01 94.4% 89.2%
3970949 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 35.0 3.20e-01 83.1% 44.3%
4983389 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 37.0 4.20e-01 82.0% 84.6%
4311691 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 37.0 3.21e-01 82.0% 41.5%
5080202 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 37.0 3.28e-01 83.1% 44.0%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 36.0 4.05e-01 83.1% 78.6%
4190716 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 35.0 3.22e-01 83.1% 46.1%
3620698 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.58 43.0 4.24e-01 94.4% 72.6%
5032554 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 36.0 3.21e-01 83.1% 44.0%
4103327 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 37.0 3.34e-01 83.1% 47.2%
4606688 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 36.0 3.95e-01 83.1% 76.0%
3943796 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 35.0 3.74e-01 83.1% 68.8%
419 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 36.0 3.89e-01 83.1% 75.0%
4237578 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 35.0 3.19e-01 83.1% 46.7%
4235194 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 35.0 3.09e-01 83.1% 44.0%
4679970 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.55 45.0 4.30e-01 87.6% 82.9%
5039702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 29.0 3.79e-01 91.0% 97.8%
3165957 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.55 39.0 4.20e-01 73.0% 96.0%
4623446 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 35.0 3.11e-01 82.0% 45.2%
3389015 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 4.02e-01 94.4% 71.0%
3226147 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.55 42.0 4.28e-01 97.8% 84.7%
4040298 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 35.0 3.67e-01 98.9% 71.2%
3948546 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 35.0 3.44e-01 83.1% 59.0%
3824358 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.54 46.0 3.61e-01 93.3% 86.3%
4236717 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 34.0 3.05e-01 82.0% 47.5%
3964664 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 33.0 3.67e-01 88.8% 83.8%
3242411 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.52 44.0 4.16e-01 95.5% 97.3%
5011086 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 44.0 4.43e-01 95.5% 92.2%