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NC_023717.1__YP_009015044.1__CL97_gp082__00082

Bact-Vir

NC_023717.1__YP_009015044.1__CL97_gp082__00082

Identity

Accession:
NC_023717 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Cronobacter_phage_CR9

TaxID: 1162290

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-96
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.63 47.0 4.26e-01 80.6% 98.9%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 48.0 4.27e-01 82.1% 73.1%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.60 40.0 3.62e-01 82.1% 51.1%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.25e-01 89.6% 87.8%
2je8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 49.0 3.54e-01 92.5% 92.7%
7cd1D01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 47.0 3.48e-01 89.6% 89.1%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 4.19e-01 89.6% 90.4%
5g47A01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 4.35e-01 89.6% 94.0%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 46.0 3.98e-01 89.6% 68.9%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 42.0 4.51e-01 80.6% 100.0%
7dodB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.09e-01 82.1% 74.6%
5tzmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.13e-01 89.6% 92.2%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.18e-01 89.6% 86.0%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 41.0 3.33e-01 80.6% 92.7%
3besR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.23e-01 89.6% 91.6%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.93e-01 89.6% 86.3%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 36.0 3.98e-01 77.6% 90.0%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 40.0 3.26e-01 80.6% 54.7%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.55 40.0 3.30e-01 80.6% 87.9%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.92e-01 94.0% 88.7%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 40.0 3.82e-01 80.6% 93.9%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.82e-01 89.6% 97.8%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.61e-01 89.6% 77.6%
1c4pC00 3.10.20.180 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 40.0 3.36e-01 91.0% 70.5%
3ujzA03 2.60.20.40 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.51 37.0 3.34e-01 79.1% 55.0%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 38.0 3.12e-01 83.6% 50.8%
4hj1B03 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.61e-01 88.1% 90.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 48.0 4.35e-01 82.1% 88.9%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.62 47.0 3.36e-01 83.6% 41.0%
4959856 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 47.0 4.65e-01 89.6% 78.6%
5019386 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 39.0 4.44e-01 77.6% 100.0%
5018560 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.60 40.0 2.81e-01 85.1% 20.0%
3477728 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.60 45.0 4.04e-01 80.6% 64.2%
4567075 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.59 47.0 3.15e-01 89.6% 36.8%
3169767 1.1.7.49 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ski7_2nd 0.58 45.0 3.60e-01 85.1% 67.9%
3665168 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.58 47.0 3.94e-01 91.0% 82.5%
3442683 11.1.4.101 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7771 0.57 50.0 4.14e-01 95.5% 87.0%
4950482 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 42.0 4.09e-01 79.1% 70.7%
5019938 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 44.0 3.07e-01 85.1% 91.7%
4937997 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.56 46.0 4.33e-01 89.6% 81.2%
3496890 2011.1.1.0 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.54 40.0 2.47e-01 80.6% 25.7%
5030329 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 4.09e-01 89.6% 91.8%
4933103 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.54 38.0 4.04e-01 80.6% 85.0%
5056065 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.54 42.0 3.75e-01 86.6% 74.0%
3927868 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 43.0 4.32e-01 91.0% 90.0%
4937491 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.53 42.0 4.03e-01 89.6% 86.3%
4033197 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.98e-01 89.6% 86.3%
3875797 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 35.0 3.09e-01 71.6% 66.1%
4144048 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 41.0 4.03e-01 89.6% 92.0%
5058228 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.42e-01 82.1% 80.6%
4544843 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.51 42.0 3.42e-01 92.5% 70.4%