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NC_023717.1__YP_009015083.1__CL97_gp121__00121

Bact-Vir

NC_023717.1__YP_009015083.1__CL97_gp121__00121

Identity

Accession:
NC_023717 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Cronobacter_phage_CR9

TaxID: 1162290

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-63
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.75 58.0 5.05e-01 84.5% 100.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 57.0 5.27e-01 100.0% 69.2%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.69 46.0 4.03e-01 70.7% 47.1%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 45.0 4.13e-01 72.4% 55.4%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 52.0 4.87e-01 87.9% 84.7%
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 52.0 5.22e-01 93.1% 96.6%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.64 50.0 4.35e-01 87.9% 68.5%
3dewA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 49.0 5.04e-01 87.9% 100.0%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 49.0 4.02e-01 84.5% 93.5%
3k59A07 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.62 49.0 3.75e-01 87.9% 88.7%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.62 54.0 4.56e-01 98.3% 91.9%
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.62 50.0 4.60e-01 89.7% 77.6%
5xbfA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.61 49.0 4.31e-01 98.3% 61.6%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.60 49.0 3.94e-01 100.0% 94.0%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.60 45.0 3.55e-01 87.9% 54.6%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 42.0 3.91e-01 75.9% 78.7%
2x1lA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 50.0 3.65e-01 98.3% 93.6%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.59 45.0 3.40e-01 84.5% 45.3%
1wjtA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.58 48.0 3.94e-01 89.7% 50.5%
2vklA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.57 48.0 4.45e-01 96.6% 77.9%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.57 43.0 4.00e-01 84.5% 81.8%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 43.0 4.31e-01 87.9% 98.3%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 44.0 4.36e-01 89.7% 88.9%
1r4aE00 1.10.220.60 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GRIP domain 0.55 37.0 3.91e-01 81.0% 80.4%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 49.0 4.47e-01 100.0% 89.7%
2cazE00 1.20.1440.200 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain 0.54 48.0 4.00e-01 100.0% 69.3%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.52 46.0 3.87e-01 100.0% 70.3%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.50 39.0 2.68e-01 94.8% 40.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3226057 101.1.1.473 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF29860 0.81 70.0 6.60e-01 96.6% 88.6%
5054075 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.71 44.0 4.41e-01 75.9% 61.7%
3228455 4230.1.1.7 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › Y_phosphatase 0.67 55.0 4.79e-01 91.4% 67.8%
3322476 101.1.10.32 ↗ alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_N 0.66 50.0 3.63e-01 84.5% 83.4%
3638005 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.65 46.0 4.24e-01 74.1% 57.3%
5001603 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.65 56.0 4.95e-01 100.0% 92.2%
3865528 101.35.1.8 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF4560 0.65 52.0 5.22e-01 89.7% 93.3%
3694638 5059.1.1.10 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sulf_transp 0.64 56.0 3.57e-01 100.0% 74.9%
5036523 1030.1.1.1 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.63 52.0 4.19e-01 98.3% 65.6%
3187172 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 52.0 4.95e-01 94.8% 92.9%
3978907 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.61 55.0 4.69e-01 98.3% 81.1%
4953831 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.61 53.0 3.78e-01 100.0% 56.7%
4385365 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.61 43.0 3.44e-01 74.1% 45.5%
4267024 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.60 42.0 3.84e-01 72.4% 64.0%
3724867 192.15.1.1 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 0.60 50.0 4.23e-01 94.8% 70.0%
3400921 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.59 49.0 4.75e-01 96.6% 93.8%
4028650 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 43.0 4.33e-01 96.6% 75.0%
5046413 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 45.0 4.62e-01 81.0% 96.4%
5067071 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.58 44.0 4.32e-01 84.5% 93.8%
5069090 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 39.0 3.90e-01 74.1% 71.7%
3719494 109.4.1.588 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FPL 0.55 47.0 3.19e-01 93.1% 31.2%