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NC_023717.1__YP_009015121.1__CL97_gp159__00159

Bact-Vir

NC_023717.1__YP_009015121.1__CL97_gp159__00159

Identity

Accession:
NC_023717 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Cronobacter_phage_CR9

TaxID: 1162290

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: rep: MH586731.1__AXY86368.1__Meda_108__00108__D3-75
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.69 56.0 4.81e-01 88.7% 85.0%
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.67 34.0 4.34e-01 98.6% 89.5%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.67 31.0 3.96e-01 91.5% 84.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 39.0 4.60e-01 100.0% 89.1%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 31.0 4.02e-01 94.4% 84.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 39.0 4.42e-01 100.0% 80.8%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 4.39e-01 100.0% 84.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 37.0 4.37e-01 97.2% 89.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 37.0 3.31e-01 100.0% 42.0%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.61 53.0 4.18e-01 97.2% 55.7%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 36.0 4.00e-01 100.0% 78.4%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 37.0 3.12e-01 70.4% 35.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 35.0 4.10e-01 100.0% 85.4%
3e8vA00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.58 46.0 4.42e-01 91.5% 74.4%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.58 33.0 3.41e-01 100.0% 57.1%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 26.0 3.57e-01 94.4% 93.3%
1zy9A03 2.60.40.2760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 33.0 3.91e-01 100.0% 93.0%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 40.0 3.12e-01 76.1% 73.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 4.06e-01 100.0% 84.7%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.78e-01 90.1% 57.8%
4h4fA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.99e-01 93.0% 79.1%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 47.0 3.87e-01 91.5% 76.4%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 43.0 2.96e-01 90.1% 82.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.55 34.0 3.80e-01 98.6% 86.3%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 37.0 3.69e-01 71.8% 86.7%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 3.85e-01 100.0% 78.1%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 45.0 3.60e-01 93.0% 93.1%
2wnvD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.61e-01 90.1% 50.4%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 46.0 3.64e-01 93.0% 82.4%
2xxlA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 43.0 3.64e-01 91.5% 77.7%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 33.0 3.74e-01 100.0% 80.4%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.66e-01 93.0% 82.4%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.98e-01 90.1% 91.7%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 35.0 3.83e-01 100.0% 84.2%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.41e-01 94.4% 78.4%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.53 42.0 3.73e-01 91.5% 84.7%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.55e-01 90.1% 65.1%
2mgzA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 37.0 3.42e-01 76.1% 85.1%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.52 37.0 3.61e-01 100.0% 67.9%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 35.0 3.47e-01 70.4% 67.1%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 33.0 3.20e-01 100.0% 58.2%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 34.0 3.37e-01 71.8% 64.5%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.51 38.0 3.83e-01 98.6% 81.9%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.30e-01 88.7% 45.7%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.39e-01 90.1% 62.5%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 44.0 3.01e-01 100.0% 99.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2352 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.73 33.0 4.54e-01 95.8% 87.9%
3907533 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.71 37.0 4.59e-01 94.4% 87.5%
4554167 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 33.0 3.35e-01 80.3% 47.1%
3620094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 38.0 4.19e-01 100.0% 72.7%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 37.0 4.03e-01 100.0% 67.2%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 38.0 3.49e-01 100.0% 45.6%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.62 37.0 3.94e-01 100.0% 68.3%
4346148 821.1.1.12 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF29812 0.61 41.0 3.49e-01 70.4% 46.4%
3258369 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 34.0 4.18e-01 97.2% 100.0%
3925225 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 31.0 3.91e-01 93.0% 97.1%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.60 39.0 4.04e-01 100.0% 70.8%
3929784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 36.0 4.12e-01 98.6% 86.0%
4680886 69.1.1.14 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 0.59 47.0 3.66e-01 90.1% 41.2%
3782638 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.57 49.0 3.66e-01 97.2% 65.4%
4003497 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 47.0 3.69e-01 97.2% 51.8%
3705026 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.57 49.0 4.02e-01 100.0% 63.6%
2670369 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 35.0 2.95e-01 70.4% 34.1%
5053721 2492.1.1.5 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.57 48.0 3.85e-01 95.8% 67.8%
3795635 220.1.1.29 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.56 45.0 3.54e-01 100.0% 42.1%
3584345 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.56 41.0 3.39e-01 78.9% 68.9%
3511200 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.56 43.0 4.05e-01 81.7% 82.4%
3424085 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 47.0 3.06e-01 94.4% 91.5%
3906505 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.55 45.0 3.56e-01 88.7% 47.6%
3935767 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 41.0 2.67e-01 78.9% 66.6%
4981103 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.55 37.0 3.19e-01 71.8% 93.6%
3572890 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 46.0 3.72e-01 97.2% 59.3%
3040109 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 29.0 3.44e-01 95.8% 76.6%
5016488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.27e-01 98.6% 91.7%
3585565 220.1.1.159 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP 0.54 46.0 3.65e-01 100.0% 93.1%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 36.0 3.79e-01 71.8% 83.1%
3454685 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 45.0 2.95e-01 95.8% 91.5%
3979533 10.32.1.55 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glft2_N 0.53 40.0 3.31e-01 90.1% 42.9%
5081134 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.53 39.0 4.12e-01 88.7% 96.7%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.53 36.0 3.81e-01 71.8% 81.7%
3716426 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.53 45.0 3.69e-01 100.0% 80.0%
3623511 220.1.1.159 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP 0.52 44.0 3.38e-01 97.2% 96.0%
3435674 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.52 45.0 3.53e-01 100.0% 94.4%
4085937 206.1.3.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSP_synth 0.51 44.0 2.85e-01 97.2% 59.1%
159821 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.51 40.0 3.30e-01 88.7% 45.7%
5078711 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 35.0 2.95e-01 91.5% 41.7%
3543794 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.50 44.0 3.40e-01 98.6% 76.4%
3215728 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 31.0 3.28e-01 98.6% 71.7%
4086633 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.50 44.0 3.41e-01 98.6% 78.8%