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NC_023720.1__YP_009016071.1__CL67_gp85__00085
Bact-VirNC_023720.1__YP_009016071.1__CL67_gp85__00085
Identity
- Accession:
- NC_023720 ↗
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Taxonomy
TaxID: 2922996
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-72
Domain cluster:
rep: NC_042326.1__YP_009637525.1__FGG25_gp87__00087__D6-61
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24216.2 best | DUF7435 | 84.3 | 7.60e-24 | 98.6% | 95.1% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8hmcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.68 | 49.0 | 3.14e-01 | 75.7% | 36.4% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.67 | 58.0 | 5.55e-01 | 97.1% | 96.2% |
| 5xyig01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 45.0 | 2.97e-01 | 71.4% | 24.7% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.66 | 54.0 | 4.20e-01 | 90.0% | 99.3% |
| 2icgA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.61 | 50.0 | 4.01e-01 | 97.1% | 91.2% |
| 3d5pA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.61 | 50.0 | 4.16e-01 | 95.7% | 94.7% |
| 2pbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 47.0 | 3.34e-01 | 85.7% | 77.5% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 43.0 | 4.05e-01 | 75.7% | 75.0% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 47.0 | 4.34e-01 | 88.6% | 80.0% |
| 2dfkC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 41.0 | 3.30e-01 | 72.9% | 61.7% |
| 5m8cB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 48.0 | 3.10e-01 | 90.0% | 89.9% |
| 4gq1A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 49.0 | 3.21e-01 | 100.0% | 84.4% |
| 3qwxX01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 45.0 | 3.99e-01 | 91.4% | 83.9% |
| 1y1uA04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 42.0 | 3.95e-01 | 81.4% | 81.6% |
| 4n03A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 41.0 | 3.21e-01 | 82.9% | 81.2% |
| 3zxfA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 45.0 | 3.73e-01 | 95.7% | 72.6% |
| 1hxnA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.53 | 45.0 | 3.29e-01 | 97.1% | 86.2% |
| 1e2tA03 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.53 | 40.0 | 3.52e-01 | 85.7% | 76.9% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 37.0 | 3.21e-01 | 72.9% | 62.0% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.52 | 43.0 | 3.38e-01 | 91.4% | 81.2% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 42.0 | 3.95e-01 | 90.0% | 83.1% |
| 2jvnA00 | 3.90.640.80 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.52 | 34.0 | 2.88e-01 | 100.0% | 36.5% |
| 8bypX01 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.51 | 40.0 | 2.54e-01 | 88.6% | 46.6% |
| 2l6cA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 38.0 | 3.46e-01 | 84.3% | 99.0% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.51 | 43.0 | 3.92e-01 | 100.0% | 73.5% |
| 3b7wA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.51 | 37.0 | 2.36e-01 | 81.4% | 31.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3763863 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.76 | 55.0 | 5.17e-01 | 77.1% | 67.1% |
| 3871241 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.71 | 51.0 | 3.49e-01 | 77.1% | 21.2% |
| 4123723 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.66 | 56.0 | 5.05e-01 | 97.1% | 79.0% |
| 3233582 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 48.0 | 3.20e-01 | 85.7% | 20.0% |
| 2701923 | 243.3.1.6 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Monellin | 0.62 | 43.0 | 3.87e-01 | 72.9% | 91.9% |
| 3791563 | 5.1.2.45 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF7911 | 0.62 | 54.0 | 3.59e-01 | 100.0% | 89.0% |
| 3994977 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 53.0 | 3.47e-01 | 100.0% | 76.1% |
| 3199763 | 220.1.1.202 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N | 0.61 | 44.0 | 3.67e-01 | 77.1% | 60.0% |
| 4360499 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 53.0 | 4.53e-01 | 100.0% | 91.3% |
| 3379168 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.60 | 43.0 | 4.44e-01 | 77.1% | 92.1% |
| 4216191 | 3844.1.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C | 0.59 | 42.0 | 3.74e-01 | 77.1% | 50.5% |
| 4392365 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.59 | 52.0 | 3.36e-01 | 98.6% | 87.8% |
| 4829352 | 5.1.2.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N | 0.59 | 49.0 | 3.03e-01 | 97.1% | 51.3% |
| 3888413 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.58 | 50.0 | 2.93e-01 | 100.0% | 45.8% |
| 1731086 | 295.1.1.9 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Imm42 | 0.57 | 45.0 | 3.58e-01 | 88.6% | 64.5% |
| 5053431 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.57 | 49.0 | 3.89e-01 | 100.0% | 69.7% |
| 3615649 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 41.0 | 4.44e-01 | 78.6% | 100.0% |
| 3458155 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.57 | 49.0 | 3.26e-01 | 98.6% | 81.0% |
| 3937328 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 46.0 | 3.11e-01 | 100.0% | 75.7% |
| 3778135 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.55 | 38.0 | 3.06e-01 | 72.9% | 53.3% |
| 4566539 | 5.1.4.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 | 0.55 | 48.0 | 3.00e-01 | 100.0% | 82.2% |
| 4965501 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.53 | 39.0 | 3.69e-01 | 80.0% | 85.6% |
| 3607724 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.52 | 41.0 | 3.41e-01 | 87.1% | 75.4% |
| 6668 | 4036.1.1.1 ↗ | a+b two layers › Insertion domain in adenylylcyclase toxin (the edema factor) › Insertion domain in adenylylcyclase toxin (the edema factor) › Insertion domain in adenylylcyclase toxin (the edema factor) › Anthrax_toxA | 0.52 | 40.0 | 3.30e-01 | 87.1% | 81.6% |
| 3262446 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.51 | 42.0 | 3.84e-01 | 90.0% | 75.3% |
| 5058742 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 37.0 | 2.23e-01 | 77.1% | 34.7% |