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NC_023732.1__YP_009017268.1__CL57_gp043__00043

Bact-Vir

NC_023732.1__YP_009017268.1__CL57_gp043__00043

Identity

Accession:
NC_023732 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Faithunavirus› Mycobacterium_phage_Rumpelstiltskin

TaxID: 2922997

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-117
PDB
Domain cluster: rep: MK967380.1__QDM56058.1__SEA_SLEEPYHEAD_43__00043__D12-108
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19698.6 best DUF6197 46.9 4.40e-12 91.4% 91.0%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ewcA03 1.20.120.1660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 38.0 4.37e-01 94.3% 88.0%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.59 31.0 3.58e-01 100.0% 68.8%
1vqzA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 49.0 3.82e-01 95.2% 87.6%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.56 44.0 4.03e-01 100.0% 62.9%
1vbiA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.54 33.0 3.34e-01 84.8% 60.2%
3qwlA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.53 37.0 3.37e-01 77.1% 55.1%
4uobA01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.53 40.0 3.92e-01 89.5% 73.3%
3hv0A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.52 38.0 3.80e-01 95.2% 74.1%
2f22A00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 41.0 3.74e-01 100.0% 64.1%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.51 30.0 3.22e-01 86.7% 67.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4496656 101.1.1.374 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF28962 0.60 28.0 3.52e-01 95.2% 72.3%
4177433 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 33.0 3.89e-01 93.3% 85.7%
3412338 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 44.0 3.23e-01 88.6% 90.3%
4944622 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 36.0 3.76e-01 95.2% 73.7%
4880806 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.54 37.0 3.78e-01 78.1% 71.2%
3528596 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.54 32.0 2.99e-01 84.8% 44.4%
3264751 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.52 38.0 3.51e-01 98.1% 57.2%
56810 620.1.1.0 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.51 40.0 3.70e-01 100.0% 64.5%