←Back to structures

NC_023735.1__YP_009017617.1__CL92_gp003__00003

Bact-Vir

NC_023735.1__YP_009017617.1__CL92_gp003__00003

Identity

Accession:
NC_023735 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pepyhexavirus› Rhodococcus_phage_ReqiPepy6

TaxID: 691965

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-284
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.71 41.0 5.29e-01 85.1% 97.3%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 54.0 6.02e-01 92.9% 99.0%
1ms5B02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 55.0 5.59e-01 96.1% 84.5%
3azwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 56.0 5.95e-01 96.9% 95.7%
1wmxA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.65 44.0 5.23e-01 85.1% 99.4%
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 55.0 5.67e-01 92.9% 91.5%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 5.13e-01 94.1% 98.9%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 39.0 4.82e-01 85.1% 97.5%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 32.0 4.25e-01 86.3% 92.0%
8a7dC01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 4.65e-01 73.7% 99.5%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 27.0 3.97e-01 75.7% 100.0%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 44.0 4.88e-01 85.5% 98.0%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 4.93e-01 85.9% 100.0%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 36.0 4.23e-01 71.8% 85.6%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 4.91e-01 86.3% 100.0%
5ocrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 4.62e-01 86.3% 95.3%
2ednA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 26.0 3.69e-01 81.2% 91.5%
4ae2B02 2.60.120.1000 Mainly Beta › Sandwich › Jelly Rolls › 0.56 36.0 4.34e-01 85.5% 96.4%
2okxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 31.0 3.75e-01 85.9% 80.0%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 4.67e-01 85.5% 98.5%
1gv9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 4.85e-01 86.7% 98.2%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 4.70e-01 83.9% 100.0%
1axiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 22.0 3.25e-01 90.6% 93.1%
1xppD00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.51 20.0 2.97e-01 78.0% 82.2%
1g1kA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 30.0 3.80e-01 84.7% 99.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
337395 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.71 41.0 5.29e-01 85.1% 97.3%
5083095 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 46.0 5.61e-01 85.5% 100.0%
4937656 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.70 56.0 6.17e-01 92.9% 99.0%
4651619 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.69 50.0 5.72e-01 87.1% 98.4%
5064594 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 42.0 5.26e-01 76.9% 98.7%
3243464 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 38.0 4.93e-01 86.7% 98.6%
3532954 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 50.0 5.61e-01 97.3% 100.0%
5038400 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 41.0 4.50e-01 86.3% 76.2%
3708395 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.64 56.0 5.66e-01 94.1% 91.0%
3715341 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.63 55.0 5.35e-01 96.9% 81.7%
3223748 10.32.1.21 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.63 39.0 4.71e-01 85.9% 92.4%
5051219 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.62 32.0 4.34e-01 85.9% 94.6%
4000645 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.62 43.0 5.07e-01 87.5% 99.4%
4656992 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 49.0 5.36e-01 92.5% 99.5%
3287811 10.32.1.17 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.60 37.0 4.33e-01 85.9% 86.9%
3865581 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 48.0 5.12e-01 99.6% 95.9%
3687585 10.1.1.27 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Alginate_lyase2 0.59 47.0 4.92e-01 82.0% 100.0%
3759214 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.59 42.0 4.85e-01 87.5% 98.9%
3759212 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.59 41.0 4.76e-01 87.1% 96.8%
342906 10.1.1.27 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Alginate_lyase2 0.59 46.0 4.84e-01 80.4% 99.6%
3528559 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.58 39.0 4.56e-01 87.8% 97.1%
3192308 10.1.1.48 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Polysacc_lyase-like 0.58 48.0 5.13e-01 91.8% 98.7%
4011408 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 47.0 5.05e-01 91.0% 96.9%
3262746 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.56 38.0 4.40e-01 85.9% 94.4%
3497760 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.55 38.0 4.24e-01 75.3% 88.5%
4324122 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.55 39.0 4.47e-01 87.1% 97.8%
3805853 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.55 32.0 3.59e-01 85.1% 71.8%
3680135 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.54 45.0 4.49e-01 86.7% 99.6%
3476991 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.53 39.0 3.85e-01 73.7% 81.1%
3992573 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 4.76e-01 94.1% 99.6%
3493887 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.52 37.0 4.07e-01 74.1% 88.2%
4929502 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 25.0 3.53e-01 82.0% 95.0%
3177363 11.1.5.134 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF29914 0.52 31.0 3.84e-01 90.2% 97.3%
2045147 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.51 38.0 3.90e-01 74.5% 80.5%
4596520 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.51 38.0 3.99e-01 85.9% 85.2%