←Back to structures
NC_023735.1__YP_009017688.1__CL92_gp080__00074
Bact-VirNC_023735.1__YP_009017688.1__CL92_gp080__00074
Identity
- Accession:
- NC_023735 ↗
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Taxonomy
TaxID: 691965
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-116
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mp4A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 43.0 | 3.69e-01 | 70.2% | 95.2% |
| 2xfaA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 43.0 | 3.87e-01 | 70.2% | 97.9% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 40.0 | 3.58e-01 | 70.2% | 94.6% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 42.0 | 3.68e-01 | 78.8% | 93.4% |
| 5ynrA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 37.0 | 3.44e-01 | 70.2% | 97.1% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 39.0 | 3.57e-01 | 75.0% | 63.6% |
| 2kvkA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 39.0 | 3.49e-01 | 76.0% | 90.3% |
| 3tghA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 39.0 | 2.79e-01 | 78.8% | 77.5% |
| 2bmjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 36.0 | 3.08e-01 | 72.1% | 75.3% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 36.0 | 2.99e-01 | 80.8% | 41.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3264140 | 3082.1.1.0 ↗ | extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 | 0.63 | 25.0 | 3.78e-01 | 82.7% | 100.0% |
| 3248345 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.61 | 44.0 | 4.01e-01 | 75.0% | 96.3% |
| 3890221 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.60 | 43.0 | 3.92e-01 | 75.0% | 97.1% |
| 1687174 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.59 | 40.0 | 3.58e-01 | 70.2% | 94.6% |
| 2755261 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.54 | 34.0 | 2.87e-01 | 93.3% | 34.6% |
| 3262616 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.54 | 34.0 | 4.02e-01 | 82.7% | 89.3% |
| 3994958 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.52 | 39.0 | 3.56e-01 | 77.9% | 94.1% |
| 4987352 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 40.0 | 3.50e-01 | 81.7% | 83.7% |
| 3232550 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 32.0 | 3.49e-01 | 92.3% | 78.8% |
| 4534897 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.50 | 35.0 | 2.55e-01 | 72.1% | 50.4% |
D2
high
residues 126-237
Domain cluster:
rep: NC_023735.1__YP_009017688.1__CL92_gp080__00074__D13-116