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NC_023736.1__YP_009017722.1__CJ97_gp01__00001

Bact-Vir

NC_023736.1__YP_009017722.1__CJ97_gp01__00001

Identity

Accession:
NC_023736 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Kelmasvirus› Ralstonia_phage_RSB2

TaxID: 913183

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.66 39.0 2.54e-01 86.4% 14.6%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.64 44.0 3.00e-01 71.2% 54.9%
7as8L01 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.61 50.0 4.34e-01 95.5% 97.3%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 45.0 3.64e-01 78.8% 53.0%
1gmnA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.60 40.0 3.68e-01 72.7% 52.3%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.59 41.0 3.94e-01 72.7% 86.8%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 41.0 3.46e-01 97.0% 45.9%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.54 40.0 3.96e-01 78.8% 74.6%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.52 38.0 3.63e-01 78.8% 78.2%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.52 41.0 3.59e-01 90.9% 94.5%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 40.0 2.59e-01 86.4% 89.2%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 36.0 3.09e-01 75.8% 74.8%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.51 30.0 3.14e-01 78.8% 62.7%
2l1aA00 3.10.20.530 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 37.0 3.29e-01 83.3% 91.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988225 4187.1.1.2 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL 0.75 63.0 5.01e-01 90.9% 89.6%
3675525 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 52.0 5.19e-01 78.8% 88.2%
3699463 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 41.0 2.79e-01 92.4% 19.5%
4954188 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.65 48.0 3.70e-01 78.8% 49.7%
4935672 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.64 48.0 3.78e-01 80.3% 67.9%
3941506 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.64 53.0 3.38e-01 92.4% 33.4%
4546356 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 49.0 4.52e-01 89.4% 64.7%
5000735 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 3.65e-01 90.9% 32.6%
4466102 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.62 48.0 3.62e-01 90.9% 32.9%
4403519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 3.58e-01 90.9% 32.9%
4645846 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.61 47.0 3.57e-01 90.9% 32.9%
3579910 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.60 41.0 4.35e-01 71.2% 88.3%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 41.0 3.67e-01 87.9% 52.2%
5072499 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.60 48.0 3.42e-01 87.9% 85.5%
3627915 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.59 40.0 3.80e-01 71.2% 71.2%
4344487 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.59 45.0 3.47e-01 90.9% 33.9%
4999182 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 38.0 3.64e-01 98.5% 58.7%
4994897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 3.13e-01 72.7% 89.6%
4507638 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 44.0 3.38e-01 90.9% 33.9%
4478999 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 42.0 3.20e-01 90.9% 32.4%
4527101 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 42.0 3.25e-01 89.4% 34.4%
3595016 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 39.0 3.30e-01 72.7% 79.1%
3408914 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.55 39.0 3.14e-01 75.8% 56.9%
3693835 601.1.1.90 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 0.55 45.0 3.27e-01 87.9% 80.6%
4946799 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.54 47.0 3.90e-01 93.9% 60.0%
5022231 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 36.0 3.08e-01 71.2% 44.8%
3818705 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.53 38.0 3.60e-01 75.8% 72.5%
5042462 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 41.0 3.19e-01 90.9% 33.9%
4077806 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.52 41.0 2.93e-01 86.4% 29.8%
3587282 142.1.1.10 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.51 28.0 2.78e-01 89.4% 42.9%
3278423 327.1.1.7 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain › PF28778 0.51 38.0 4.00e-01 80.3% 100.0%
3602429 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.50 34.0 3.15e-01 72.7% 77.7%