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NC_023738.1__YP_009018077.1__CL87_gp066__00066

Bact-Vir

NC_023738.1__YP_009018077.1__CL87_gp066__00066

Identity

Accession:
NC_023738 ↗
Kingdom:
phage

Quality

66.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Omegavirus› Mycobacterium_phage_Thibault

TaxID: 1052673

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-71
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.71 61.0 5.25e-01 95.2% 65.3%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.69 58.0 4.96e-01 93.5% 62.6%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.69 61.0 4.88e-01 100.0% 56.1%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.69 49.0 4.95e-01 74.2% 78.7%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.69 56.0 4.77e-01 90.3% 60.4%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.69 57.0 5.00e-01 93.5% 67.0%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.68 60.0 5.22e-01 100.0% 67.0%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.67 57.0 4.72e-01 96.8% 65.2%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.67 58.0 4.90e-01 98.4% 62.5%
1ncsA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 44.0 4.85e-01 98.4% 91.5%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 56.0 4.62e-01 95.2% 55.8%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.65 58.0 3.94e-01 100.0% 62.0%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 55.0 4.77e-01 100.0% 64.4%
2lw7A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 55.0 4.56e-01 98.4% 58.8%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 51.0 3.36e-01 88.7% 57.4%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.64 48.0 2.97e-01 82.3% 30.8%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 52.0 4.13e-01 90.3% 62.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 44.0 4.40e-01 77.4% 69.7%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.64 49.0 4.00e-01 83.9% 54.2%
1c5kA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 51.0 3.40e-01 90.3% 76.3%
3dr2A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 50.0 3.24e-01 88.7% 71.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.63 54.0 3.36e-01 96.8% 34.6%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 48.0 2.94e-01 85.5% 45.3%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 40.0 3.59e-01 100.0% 47.2%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 3.77e-01 98.4% 52.9%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 41.0 3.64e-01 71.0% 80.0%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.60 48.0 3.41e-01 87.1% 84.8%
1zymA01 3.50.30.10 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain 0.60 41.0 3.38e-01 72.6% 91.7%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 40.0 3.86e-01 71.0% 64.9%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.59 46.0 4.47e-01 88.7% 90.1%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.59 46.0 4.49e-01 88.7% 85.9%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.59 47.0 3.57e-01 93.5% 81.2%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 2.97e-01 87.1% 37.6%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.58 46.0 2.80e-01 87.1% 45.7%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 3.03e-01 100.0% 73.3%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.26e-01 98.4% 54.9%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.36e-01 96.8% 57.8%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 45.0 3.03e-01 96.8% 48.3%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 43.0 3.87e-01 90.3% 78.3%
4pkfB00 4.10.490.20 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › 0.54 36.0 3.54e-01 77.4% 62.3%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.54 45.0 3.32e-01 96.8% 67.1%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 37.0 2.32e-01 75.8% 98.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 43.0 3.47e-01 100.0% 74.0%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 43.0 2.85e-01 100.0% 35.6%
1lmlA04 2.30.34.10 Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4 0.53 44.0 3.85e-01 96.8% 81.8%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.53 45.0 4.08e-01 100.0% 86.7%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 35.0 2.88e-01 74.2% 89.6%
2wfbA00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.51 35.0 2.94e-01 72.6% 55.0%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.67e-01 85.5% 85.9%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 43.0 3.61e-01 100.0% 67.2%
6bbtB01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.42e-01 100.0% 80.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.86e-01 79.0% 100.0%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 39.0 3.38e-01 100.0% 51.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4441936 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.72 65.0 5.05e-01 100.0% 50.8%
4248887 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.71 63.0 4.98e-01 100.0% 51.5%
4977821 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.70 61.0 5.26e-01 100.0% 67.0%
4675950 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.70 62.0 4.91e-01 100.0% 52.8%
4120451 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.69 59.0 4.60e-01 96.8% 49.6%
None — 0.69 61.0 5.25e-01 100.0% 66.7%
4595485 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.69 61.0 4.72e-01 100.0% 48.9%
4930465 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.68 46.0 4.68e-01 71.0% 71.7%
4212413 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 56.0 4.91e-01 91.9% 66.0%
5025933 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.09e-01 74.2% 93.7%
4213613 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 58.0 4.85e-01 100.0% 62.7%
3984091 3180.1.1.1 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.66 54.0 4.51e-01 88.7% 56.2%
3596085 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 46.0 4.29e-01 74.2% 61.3%
4029644 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.65 53.0 4.01e-01 90.3% 60.4%
4062573 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.65 56.0 4.84e-01 100.0% 67.0%
4106226 5.1.4.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 0.64 50.0 3.23e-01 85.5% 36.3%
4812524 5.1.2.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.64 48.0 2.92e-01 83.9% 37.1%
3817530 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.63 49.0 3.28e-01 85.5% 54.9%
3784471 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 54.0 4.56e-01 100.0% 61.8%
3415621 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.63 41.0 4.16e-01 100.0% 68.3%
None — 0.63 49.0 3.18e-01 85.5% 37.6%
None — 0.63 49.0 3.26e-01 87.1% 42.9%
None — 0.62 50.0 3.22e-01 90.3% 61.6%
4192565 5.1.4.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 0.62 50.0 3.23e-01 90.3% 66.1%
3933838 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 49.0 3.12e-01 88.7% 67.2%
3838232 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 52.0 4.61e-01 100.0% 70.5%
4631877 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.61 49.0 2.91e-01 90.3% 95.1%
3930986 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.60 45.0 3.82e-01 80.6% 75.2%
5012156 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 53.0 4.72e-01 100.0% 78.9%
4078006 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.60 51.0 4.38e-01 100.0% 64.8%
4028916 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.59 49.0 4.24e-01 100.0% 70.9%
4309285 3844.2.1.2 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.58 48.0 3.49e-01 95.2% 60.5%
3596180 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 45.0 3.85e-01 87.1% 90.5%
3360341 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.58 50.0 3.49e-01 98.4% 41.0%
5041294 5.1.4.665 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_2 0.57 47.0 3.16e-01 100.0% 59.3%
3923314 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 43.0 2.95e-01 83.9% 42.4%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 41.0 4.34e-01 79.0% 100.0%
3666563 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.87e-01 75.8% 92.3%
3537417 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.09e-01 85.5% 100.0%
3323551 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.54 39.0 3.85e-01 75.8% 92.3%
3679595 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.54 38.0 3.65e-01 74.2% 81.1%
4948153 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 45.0 4.41e-01 95.2% 85.7%
3338602 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.54 39.0 2.96e-01 82.3% 75.1%
3437239 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 46.0 2.85e-01 95.2% 96.9%
3323558 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.53 37.0 3.80e-01 74.2% 98.3%
3370388 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.53 38.0 3.77e-01 75.8% 92.3%
3519579 295.1.1.20 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.53 44.0 4.10e-01 95.2% 83.7%
3365104 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.53 37.0 3.68e-01 74.2% 90.8%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.53 39.0 3.86e-01 79.0% 86.2%
4000403 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.53 37.0 3.95e-01 75.8% 96.0%
3323529 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.53 37.0 3.72e-01 75.8% 92.3%
3514906 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 39.0 2.83e-01 82.3% 27.9%
3377093 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 43.0 3.57e-01 100.0% 96.8%
5046498 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.51 40.0 3.08e-01 90.3% 57.0%
3435547 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 43.0 3.53e-01 96.8% 100.0%
3646226 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.51 41.0 3.87e-01 93.5% 92.5%
3465976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.55e-01 75.8% 75.4%